| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 1553.37 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 6493.58 | HC |
| SRR3140955 | leaf | "45C, 12h" | 147.87 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 9915.38 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 24.16 | HC |
| SRR8258050 | leaf_sheath | R_bph | 10473.60 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 1012.64 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 11688.12 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 4512.39 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 3397.00 | HC |
| SRR10690152 | leaf | IRBB5_0h | 57.76 | HC |
| SRR6810106 | panicle | panicle | 123.04 | HC |
| SRR7058097 | leaf | rice_mock | 3700.02 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 633.86 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 89.89 | HC |
| SRR7058098 | leaf | rice_RSV | 2872.60 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 180.66 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 55.47 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 85121.23 | HC |
| SRR2154077 | seedling | KDM105_seedling | 96797.55 | HC |
| SRR2154074 | seed | Nipponbare_seed | 21677.37 | HC |
| SRR10690151 | leaf | IRBB5_0h | 31.78 | HC |
| SRR2154072 | seed | Rathuwee_seed | 11249.66 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 9125.06 | HC |
| SRR2154070 | seed | Guangluai4_seed | 17969.99 | HC |
| SRR2154071 | seed | KDM105_seed | 8355.74 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 257.82 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 100.30 | HC |
| SRR1061625 | panicle | Heat Stress | 32.10 | HC |
| SRR1061624 | panicle | Normal | 120.48 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 383.06 | HC |
| SRR1061622 | flag_leaf | Normal | 178.42 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 320.04 | HC |
| SRR1061620 | flag_leaf | Normal | 250.69 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 133.25 | HC |
| SRR10704058 | leaf | Glyphosate | 2462.63 | HC |
| SRR447128 | root | As(III) 20 uM | 30.53 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 45.00 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 399.18 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 8162.64 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 31434.40 | HC |
| SRR1013787 | panicle | PA64s_PA | 6489.10 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 8205.35 | HC |
| SRR504363 | leaf | 93-11 X NPB | 57811.75 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 673.74 | HC |
| SRR1013789 | panicle | 93-11_PA | 4023.05 | HC |
| SRR1013788 | panicle | LYP9_PA | 6889.49 | HC |
| SRR9070101 | shoot_base | WT_base | 40.34 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 61233.13 | HC |
| SRR6810105 | panicle | panicle | 117.72 | HC |
| SRR089619 | panicle | control | 72.48 | HC |
| SRR447135 | shoot | As(III) 20 uM | 101.04 | HC |
| SRR447134 | shoot | As(III) 80 uM | 59.03 | HC |
| SRR447133 | shoot | As(III) 20 uM | 251.74 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 65.92 | HC |
| SRR447131 | root | As(III) 80 uM | 45.75 | HC |
| SRR447130 | root | As(III) 20 uM | 77.15 | HC |
| SRR1849765 | leaf | Control 30min | 591.62 | HC |
| SRR1849767 | leaf | Control 30min | 1049.99 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 129.83 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1277.90 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 1673.22 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 1996.74 | HC |
| SRR6498701 | leaf | "WT, Control" | 1537.04 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 2272.24 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 44.45 | HC |
| SRR3203907 | leaf | WT | 24354.38 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 1682.92 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 954.61 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 904.65 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 274.07 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 415.77 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 252.88 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 319.38 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 698.95 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 631.83 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 627.09 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 1024.54 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 1073.23 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 25.66 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 28.51 | HC |
| SRR447129 | root | As(III) 80 uM | 31.63 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 247.90 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 932.89 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 906.16 | HC |
| SRR1849773 | leaf | Control 120min | 1238.22 | HC |
| SRR1849772 | leaf | Control 120min | 901.93 | HC |
| SRR1849771 | leaf | Control 120min | 708.96 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1090.59 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 36239.39 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 15429.43 | HC |
| SRR3130370 | leaf | control 8 hour | 23180.11 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 24719.85 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 16577.38 | HC |
| SRR7058096 | leaf | rice_mock | 3544.90 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 72.01 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 128.02 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 144549.24 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 18.54 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 672.82 | HC |
| SRR6365689 | seedling | Wild type | 83.96 | HC |
| SRR447136 | shoot | As(III) 80 uM | 39.85 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 871.49 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 51.81 | HC |
| SRR10704060 | leaf | Glyphosate | 2603.38 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 1072.31 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 91.83 | HC |
| SRR2154075 | seed | Taipei309_seed | 17252.24 | HC |
| SRR3140952 | leaf | "45C, 0h" | 542.37 | HC |
| SRR976171 | lamina_joint | wild type | 354.77 | HC |
| SRR4098208 | root | No treatment | 1308.48 | HC |
| SRR089774 | panicle | wild-type | 28.76 | HC |
| SRR089772 | panicle | wild-type | 64.65 | HC |
| SRR4098209 | leaf | No treatment | 2981.58 | HC |
| SRR3130369 | leaf | control 8 hour | 18499.19 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 19287.76 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 18.28 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 16.17 | HC |
| SRR9070100 | shoot_base | WT_base | 50.66 | HC |
| SRR4098205 | seedling | Heat (50C) | 1084.70 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 576.43 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.10 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 11.37 | HC |
| SRR3130365 | leaf | control 0 hour | 8591.01 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 16.95 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 16734.09 | HC |
| SRR3130366 | leaf | control 0 hour | 20534.06 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 217.54 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 218.11 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 116.95 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 96.34 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 51.48 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 51.59 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 146.79 | HC |
| SRR2862364 | leaf | mock leaf cells | 43037.21 | HC |
| SRR2862365 | leaf | mock leaf cells | 16559.74 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 22308.09 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 1304.80 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 926.61 | HC |
| SRR2862363 | leaf | mock leaf cells | 18749.20 | HC |
| SRR4098207 | panicle | No treatment | 388.64 | HC |
| SRR10704055 | leaf | CK | 243.06 | HC |
| SRR10704057 | leaf | CK | 596.12 | HC |
| SRR10704056 | leaf | CK | 266.22 | HC |
| SRR10704059 | leaf | Glyphosate | 173.81 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 344.32 | HC |
| SRR9070102 | shoot_base | WT_base | 37.68 | HC |
| SRR6498699 | leaf | "WT, Control" | 1373.32 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 90117.74 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 169665.89 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 13.23 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 139.42 | HC |
| SRR10690144 | leaf | IR24_0h | 103.58 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 137.37 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 178.19 | HC |
| SRR10690143 | leaf | IR24_0h | 82.95 | HC |
| SRR10690142 | leaf | IR24_0h | 107.03 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 172.09 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 234.32 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 37.82 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 217.03 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 158.18 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 406.73 | HC |
| SRR4098203 | seedling | No treatment | 2446.07 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 58.27 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 95.58 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 129.26 | HC |
| SRR6365690 | seedling | Wild type | 63.38 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 30.24 | HC |
| SRR6365692 | panicle | Wild type | 31.82 | HC |
| SRR6365693 | panicle | Wild type | 55.15 | HC |
| SRR6365694 | panicle | Wild type | 47.65 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 2399.06 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 57.50 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 209.33 | HC |
| SRR6810101 | seedling | seedling | 1100.55 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 5967.74 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 6082.93 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 173.15 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 422.66 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 4243.88 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 5583.42 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 32.83 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 254.19 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 421.58 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 111.11 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 130.94 | HC |
| SRR1849784 | root | Control 120min | 258.89 | HC |
| SRR6365691 | panicle | Wild type | 40.10 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 271.87 | HC |
| SRR10690153 | leaf | IRBB5_0h | 109.07 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 175.06 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 317.27 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 461.19 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 124.06 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 555.28 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 390.79 | HC |
| SRR3110556 | shoot | shoot control | 18017.76 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1023.83 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 5841.71 | HC |
| SRR1061616 | panicle | Normal | 77.31 | HC |
| SRR1061617 | panicle | Heat Stress | 97.70 | HC |
| SRR1061614 | panicle | Normal | 127.70 | HC |
| SRR1061615 | panicle | Heat Stress | 168.22 | HC |
| SRR1061612 | panicle | Normal | 53.68 | HC |
| SRR1061613 | panicle | Heat Stress | 75.56 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 131.62 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 17.45 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1659.90 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 486.34 | HC |
| SRR1061618 | flag_leaf | Normal | 347.67 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 257.22 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 1419.26 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 830.16 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 1975.58 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 3404.12 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 3370.85 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 4729.70 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 2856.92 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 7.70 | HC |
| SRR3140954 | leaf | "45C, 12h" | 1071.03 | HC |
| SRR089621 | panicle | cold | 103.36 | HC |
| SRR089620 | panicle | drought | 92.74 | HC |
| SRR3140957 | leaf | "45C, 24h" | 1720.12 | HC |
| SRR089622 | panicle | salt | 63.59 | HC |
| SRR504360 | leaf | Nipponbare | 66299.79 | HC |
| SRR504361 | leaf | Nov-93 | 67276.95 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 2513.15 | HC |
| SRR2544786 | embryo | dry seed | 1639.18 | HC |
| SRR4098172 | seedling | Cold (4C) | 712.90 | HC |
| SRR3140956 | leaf | "45C, 24h" | 1186.52 | HC |
| SRR3140953 | leaf | "45C, 0h" | 752.09 | HC |
| SRR6810102 | seedling | seedling | 1450.53 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 7559.16 | HC |
| SRR10956502 | panicle | WT | 33.72 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 33311.63 | HC |
| SRR10956501 | panicle | WT | 34.39 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 4621.53 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 225.26 | HC |
| SRR8258048 | leaf_sheath | R_bph | 10836.78 | HC |
| SRR1740023 | seedling | IR64-Control | 4627.38 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 102633.85 | HC |
| SRR1740025 | seedling | PK-Control | 3184.01 | HC |
| SRR1740024 | seedling | N22-Control | 5252.13 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 878.27 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 684.08 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 15.95 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 4128.41 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 20.93 | HC |
| SRR1654490 | leaf | wild type | 49364.44 | HC |
| SRR3110557 | shoot | shoot treated | 2665.50 | HC |
| SRR5940086 | panicle | Wild type | 43.76 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 966.55 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1385.99 | HC |
| SRR8258051 | leaf_sheath | R_bph | 9177.35 | HC |
| SRR504362 | leaf | NPB X 93-11 | 71816.36 | HC |