Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
OSA-LNC107275318	1	0.2%	97	19.72%	129	26.22%	265	53.86%	HCR
OSA-LNC107275343	1	0.2%	489	99.39%	2	0.41%	0	0.0%	MCR
OSA-LNC107275359	1	0.2%	483	98.17%	8	1.63%	0	0.0%	MCR
OSA-LNC107275463	1	0.2%	476	96.75%	15	3.05%	0	0.0%	MCR
OSA-LNC107275610	1	0.2%	444	90.24%	34	6.91%	13	2.64%	HCR
OSA-LNC107275624	1	0.2%	47	9.55%	381	77.44%	63	12.8%	HCR
OSA-LNC107275657	1	0.2%	478	97.15%	11	2.24%	2	0.41%	HCR
OSA-LNC107275663	1	0.2%	286	58.13%	190	38.62%	15	3.05%	HCR
OSA-LNC107275793	1	0.2%	327	66.46%	161	32.72%	3	0.61%	HCR
OSA-LNC107276092	1	0.2%	200	40.65%	256	52.03%	35	7.11%	HCR
OSA-LNC107276180	1	0.2%	335	68.09%	117	23.78%	39	7.93%	HCR
OSA-LNC107276185	1	0.2%	266	54.07%	211	42.89%	14	2.85%	HCR
OSA-LNC107276260	1	0.2%	38	7.72%	16	3.25%	437	88.82%	HCR
OSA-LNC107276331	1	0.2%	487	98.98%	4	0.81%	0	0.0%	MCR
OSA-LNC107276654	1	0.2%	30	6.1%	192	39.02%	269	54.67%	HCR
OSA-LNC107276665	1	0.2%	478	97.15%	13	2.64%	0	0.0%	MCR
OSA-LNC107276716	1	0.2%	173	35.16%	3	0.61%	315	64.02%	HCR
OSA-LNC107276729	1	0.2%	101	20.53%	380	77.24%	10	2.03%	HCR
OSA-LNC107276735	1	0.2%	18	3.66%	212	43.09%	261	53.05%	HCR
OSA-LNC107276740	1	0.2%	241	48.98%	246	50.0%	4	0.81%	HCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

OSA-LNC107275318

0.2%