| SRR4457251 | 2nd_leaf | DAH4 | 0.31 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.23 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR358798 | callus | wt | 0.97 | MC |
| SRR6320473 | carpel | wt | 2.22 | MC |
| SRR6320498 | carpel | wt | 2.91 | MC |
| SRR5560727 | caryopsis | wild_type | 4.87 | MC |
| SRR5560728 | caryopsis | wild_type | 2.71 | MC |
| SRR5560729 | caryopsis | wild_type | 3.66 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.32 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.10 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.20 | MC |
| SRR7265400 | coleoptile | 2dA | 2.25 | MC |
| SRR7265401 | coleoptile | 2dA | 2.33 | MC |
| SRR7265402 | coleoptile | 2dA | 1.86 | MC |
| SRR7265403 | coleoptile | 2dN | 1.60 | MC |
| SRR7265404 | coleoptile | 2dN | 1.45 | MC |
| SRR7265405 | coleoptile | 2dN | 1.32 | MC |
| SRR7265406 | coleoptile | 3dA | 2.87 | MC |
| SRR7265407 | coleoptile | 3dA | 2.45 | MC |
| SRR7265408 | coleoptile | 3dA | 1.84 | MC |
| SRR7265409 | coleoptile | 3dN | 2.25 | MC |
| SRR7265410 | coleoptile | 3dN | 2.26 | MC |
| SRR7265411 | coleoptile | 3dN | 2.45 | MC |
| SRR7265412 | coleoptile | 4dA | 0.93 | MC |
| SRR7265413 | coleoptile | 4dA | 1.34 | MC |
| SRR7265414 | coleoptile | 4dA | 1.52 | MC |
| SRR7265415 | coleoptile | 4dN | 3.86 | MC |
| SRR7265416 | coleoptile | 4dN | 4.06 | MC |
| SRR7265417 | coleoptile | 4dN | 3.10 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.92 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.20 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.28 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.36 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.92 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.50 | MC |
| SRR7265376 | embryo | 1hA | 3.11 | MC |
| SRR7265382 | embryo | 3hA | 3.63 | MC |
| SRR7265383 | embryo | 3hA | 4.02 | MC |
| SRR7265388 | embryo | 12hA | 0.94 | MC |
| SRR7265389 | embryo | 12hA | 0.55 | MC |
| SRR7265390 | embryo | 12hA | 1.20 | MC |
| SRR7265391 | embryo | 12hN | 0.89 | MC |
| SRR7265392 | embryo | 12hN | 1.40 | MC |
| SRR7265393 | embryo | 12hN | 1.13 | MC |
| SRR7265394 | embryo | 24hA | 1.78 | MC |
| SRR7265395 | embryo | 24hA | 2.12 | MC |
| SRR7265396 | embryo | 24hA | 1.67 | MC |
| SRR7265397 | embryo | 24hN | 1.54 | MC |
| SRR7265398 | embryo | 24hN | 0.89 | MC |
| SRR7265399 | embryo | 24hN | 1.25 | MC |
| SRR2338869 | endosprem | high_temperature | 0.51 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.21 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.61 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.71 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.22 | MC |
| SRR8060835 | leaf | wild_type | 0.95 | MC |
| SRR8060836 | leaf | wild_type | 1.38 | MC |
| SRR8060837 | leaf | wild_type | 0.99 | MC |
| SRR8240824 | leaf | wild_type | 1.88 | MC |
| SRR8240825 | leaf | wild_type | 0.47 | MC |
| SRR8240819 | leaf | wild_type | 0.20 | MC |
| SRR8240820 | leaf | wild_type | 0.44 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.06 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.97 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.55 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.66 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.57 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.45 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.39 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.34 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.42 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.53 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.51 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.53 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.53 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.88 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.45 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.45 | MC |
| SRR1761530 | leaf | control | 0.45 | MC |
| SRR504365 | leaf | wt | 1.83 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.33 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.22 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.17 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.95 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.36 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.13 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.02 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.91 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.11 | MC |
| SRR1213692 | leaf | wt | 2.05 | MC |
| SRR1213693 | leaf | wt | 0.26 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.71 | MC |
| SRR6502088 | leaf | control | 2.01 | MC |
| SRR6502089 | leaf | control | 1.93 | MC |
| SRR6502090 | leaf | control | 1.84 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.69 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.08 | MC |
| SRR6502100 | leaf | control | 3.59 | MC |
| SRR6502101 | leaf | control | 2.94 | MC |
| SRR6502102 | leaf | control | 2.71 | MC |
| SRR5856927 | leaf | control | 0.36 | MC |
| SRR5856928 | leaf | control | 0.26 | MC |
| SRR5856929 | leaf | control | 0.20 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.21 | MC |
| SRR5856933 | leaf | control | 0.48 | MC |
| SRR5856935 | leaf | control | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.18 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.81 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR6168981 | leaf | none (control) | 0.45 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.05 | MC |
| SRR8582888 | panicle | AM | 0.79 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582890 | panicle | AM | 0.44 | MC |
| SRR8582891 | panicle | PM | 5.34 | MC |
| SRR8582892 | panicle | PM | 4.87 | MC |
| SRR8582893 | panicle | PM | 4.20 | MC |
| SRR5110429 | panicle | Dawn | 2.52 | MC |
| SRR5110430 | panicle | Dawn | 1.87 | MC |
| SRR5110431 | panicle | Dawn | 2.05 | MC |
| SRR5110432 | panicle | Dawn | 2.17 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.48 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.29 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.50 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.79 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.02 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.72 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.73 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.08 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.06 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.69 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.51 | MC |
| SRR5110445 | panicle | Dusk | 2.51 | MC |
| SRR5110446 | panicle | Dusk | 2.80 | MC |
| SRR5110447 | panicle | Dusk | 2.23 | MC |
| SRR5110448 | panicle | Dusk | 4.54 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.26 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.54 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.59 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.37 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.78 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.06 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.11 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.04 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.30 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.79 | MC |
| SRR1633182 | panicle | WT | 1.26 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.85 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.78 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.39 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.85 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.25 | MC |
| SRR5126147 | root | "mock,1_day" | 0.40 | MC |
| SRR5126149 | root | "mock,1_day" | 0.67 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.37 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.39 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.57 | MC |
| SRR5126153 | root | "mock,7_days" | 0.72 | MC |
| SRR5126155 | root | "mock,7_days" | 0.66 | MC |
| SRR5126157 | root | "mock,7_days" | 0.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.33 | MC |
| SRR5126165 | root | "mock,14_days" | 1.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.64 | MC |
| SRR5126169 | root | "mock,14_days" | 0.64 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213695 | root | wt | 0.21 | MC |
| SRR6502094 | root | control | 0.76 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502106 | root | control | 0.49 | MC |
| SRR6502107 | root | control | 0.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.59 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.39 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 2.28 | MC |
| SRR6441555 | seedling | wild_type | 1.38 | MC |
| SRR2154086 | seedling | wt | 4.10 | MC |
| SRR2154082 | seedling | wt | 2.56 | MC |
| SRR2154083 | seedling | wt | 2.53 | MC |
| SRR2154084 | seedling | wt | 3.38 | MC |
| SRR2154087 | seedling | wt | 4.08 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.56 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.92 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.03 | MC |
| SRR1944583 | seedling | no_treatment | 2.87 | MC |
| SRR358792 | seedling | wt | 0.59 | MC |
| SRR358794 | seedling | wt | 0.56 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.26 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.78 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.44 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.36 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.70 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.12 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.83 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.02 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.18 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.51 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.65 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.91 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.67 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.73 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.46 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.47 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.33 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.97 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.56 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.91 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.56 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.98 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.73 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.57 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.31 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.15 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.42 | MC |