| SRR4457249 | 2nd_leaf | DAH4 | 1.09 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.43 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.40 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.83 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.80 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.81 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR3745125 | anther | wt | 1.55 | MC |
| SRR3745126 | anther | wt | 0.57 | MC |
| SRR3745127 | anther | wt | 0.90 | MC |
| SRR5560727 | caryopsis | wild_type | 0.55 | MC |
| SRR5560728 | caryopsis | wild_type | 0.76 | MC |
| SRR5560729 | caryopsis | wild_type | 0.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.99 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR976168 | flag_leaf | wild_type | 0.72 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.22 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.59 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.56 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.73 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.10 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.67 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.79 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.54 | MC |
| SRR1213691 | flower | wt | 1.20 | MC |
| SRR8060835 | leaf | wild_type | 0.69 | MC |
| SRR8060836 | leaf | wild_type | 1.68 | MC |
| SRR8060837 | leaf | wild_type | 0.43 | MC |
| SRR8240824 | leaf | wild_type | 0.40 | MC |
| SRR8240825 | leaf | wild_type | 0.31 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.62 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.44 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.54 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.28 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.86 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.35 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.61 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.16 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.28 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.31 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.69 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.91 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.97 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.79 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.87 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.91 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.97 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.79 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.87 | MC |
| SRR1761528 | leaf | drought | 0.91 | MC |
| SRR1761529 | leaf | drought | 0.97 | MC |
| SRR1761530 | leaf | control | 0.79 | MC |
| SRR1761531 | leaf | control | 0.87 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.38 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.73 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.55 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.58 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.72 | MC |
| SRR1213692 | leaf | wt | 0.58 | MC |
| SRR1213693 | leaf | wt | 0.68 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502088 | leaf | control | 0.35 | MC |
| SRR6502089 | leaf | control | 0.35 | MC |
| SRR6502090 | leaf | control | 0.40 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR5126149 | root | "mock,1_day" | 0.50 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.35 | MC |
| SRR5126153 | root | "mock,7_days" | 0.53 | MC |
| SRR5126155 | root | "mock,7_days" | 0.92 | MC |
| SRR5126157 | root | "mock,7_days" | 0.52 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.30 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.96 | MC |
| SRR5126165 | root | "mock,14_days" | 0.59 | MC |
| SRR5126167 | root | "mock,14_days" | 2.08 | MC |
| SRR5126169 | root | "mock,14_days" | 0.45 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.44 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.32 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR1213695 | root | wt | 0.69 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.51 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502096 | root | control | 0.52 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.32 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.48 | MC |
| SRR6441554 | seedling | wild_type | 0.69 | MC |
| SRR6441555 | seedling | wild_type | 0.40 | MC |
| SRR2154086 | seedling | wt | 0.39 | MC |
| SRR2154087 | seedling | wt | 0.41 | MC |
| SRR3098741 | seedling | wt | 0.30 | MC |
| SRR3098742 | seedling | wt | 0.51 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.06 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.45 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.63 | MC |
| SRR1944583 | seedling | no_treatment | 0.76 | MC |
| SRR358793 | seedling | wt | 0.70 | MC |
| SRR358794 | seedling | wt | 0.61 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.10 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.91 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.05 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.77 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.43 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.69 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.73 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.16 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.54 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.73 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.31 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.30 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.40 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.45 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.90 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.31 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.88 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.69 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.64 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.48 | MC |