Browse: Expression Capacity

LncRNA Genes Expression Capacity

total numbers: 11005

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

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Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
OSA-LNC107275318	1	0.2%	97	19.72%	129	26.22%	265	53.86%	HCR
OSA-LNC107275343	1	0.2%	489	99.39%	2	0.41%	0	0.0%	MCR
OSA-LNC107275359	1	0.2%	483	98.17%	8	1.63%	0	0.0%	MCR
OSA-LNC107275463	1	0.2%	476	96.75%	15	3.05%	0	0.0%	MCR
OSA-LNC107275610	1	0.2%	444	90.24%	34	6.91%	13	2.64%	HCR
OSA-LNC107275624	1	0.2%	47	9.55%	381	77.44%	63	12.8%	HCR
OSA-LNC107275657	1	0.2%	478	97.15%	11	2.24%	2	0.41%	HCR
OSA-LNC107275663	1	0.2%	286	58.13%	190	38.62%	15	3.05%	HCR
OSA-LNC107275793	1	0.2%	327	66.46%	161	32.72%	3	0.61%	HCR
OSA-LNC107276092	1	0.2%	200	40.65%	256	52.03%	35	7.11%	HCR
OSA-LNC107276180	1	0.2%	335	68.09%	117	23.78%	39	7.93%	HCR
OSA-LNC107276185	1	0.2%	266	54.07%	211	42.89%	14	2.85%	HCR
OSA-LNC107276260	1	0.2%	38	7.72%	16	3.25%	437	88.82%	HCR
OSA-LNC107276331	1	0.2%	487	98.98%	4	0.81%	0	0.0%	MCR
OSA-LNC107276654	1	0.2%	30	6.1%	192	39.02%	269	54.67%	HCR
OSA-LNC107276665	1	0.2%	478	97.15%	13	2.64%	0	0.0%	MCR
OSA-LNC107276716	1	0.2%	173	35.16%	3	0.61%	315	64.02%	HCR
OSA-LNC107276729	1	0.2%	101	20.53%	380	77.24%	10	2.03%	HCR
OSA-LNC107276735	1	0.2%	18	3.66%	212	43.09%	261	53.05%	HCR
OSA-LNC107276740	1	0.2%	241	48.98%	246	50.0%	4	0.81%	HCR
OSA-LNC107276746	1	0.2%	264	53.66%	203	41.26%	24	4.88%	HCR
OSA-LNC107276770	1	0.2%	251	51.02%	141	28.66%	99	20.12%	HCR
OSA-LNC107276798	1	0.2%	388	78.86%	103	20.93%	0	0.0%	MCR
OSA-LNC107276843	1	0.2%	361	73.37%	96	19.51%	34	6.91%	HCR
OSA-LNC107276866	1	0.2%	327	66.46%	119	24.19%	45	9.15%	HCR
OSA-LNC107276879	1	0.2%	451	91.67%	40	8.13%	0	0.0%	MCR
OSA-LNC107276921	1	0.2%	95	19.31%	3	0.61%	393	79.88%	HCR
OSA-LNC107276934	1	0.2%	6	1.22%	117	23.78%	368	74.8%	HCR
OSA-LNC107276936	1	0.2%	225	45.73%	124	25.2%	142	28.86%	HCR
OSA-LNC107276937	1	0.2%	336	68.29%	150	30.49%	5	1.02%	HCR
OSA-LNC107276963	1	0.2%	23	4.67%	265	53.86%	203	41.26%	HCR
OSA-LNC107276964	1	0.2%	14	2.85%	60	12.2%	417	84.76%	HCR
OSA-LNC107276968	1	0.2%	100	20.33%	283	57.52%	108	21.95%	HCR
OSA-LNC107276984	1	0.2%	471	95.73%	19	3.86%	1	0.2%	HCR
OSA-LNC107277086	1	0.2%	43	8.74%	122	24.8%	326	66.26%	HCR
OSA-LNC107277089	1	0.2%	477	96.95%	14	2.85%	0	0.0%	MCR
OSA-LNC107277114	1	0.2%	139	28.25%	248	50.41%	104	21.14%	HCR
OSA-LNC107277140	1	0.2%	455	92.48%	35	7.11%	1	0.2%	HCR
OSA-LNC107277143	1	0.2%	430	87.4%	55	11.18%	6	1.22%	HCR
OSA-LNC107277222	1	0.2%	467	94.92%	12	2.44%	12	2.44%	HCR
OSA-LNC107277223	1	0.2%	479	97.36%	8	1.63%	4	0.81%	HCR
OSA-LNC107277225	1	0.2%	409	83.13%	77	15.65%	5	1.02%	HCR
OSA-LNC107277271	1	0.2%	357	72.56%	93	18.9%	41	8.33%	HCR
OSA-LNC107277283	1	0.2%	403	81.91%	84	17.07%	4	0.81%	HCR
OSA-LNC107277297	1	0.2%	113	22.97%	130	26.42%	248	50.41%	HCR
OSA-LNC107277303	1	0.2%	208	42.28%	259	52.64%	24	4.88%	HCR
OSA-LNC107277328	1	0.2%	304	61.79%	134	27.24%	53	10.77%	HCR
OSA-LNC107277336	1	0.2%	487	98.98%	4	0.81%	0	0.0%	MCR
OSA-LNC107277362	1	0.2%	160	32.52%	276	56.1%	55	11.18%	HCR
OSA-LNC107277372	1	0.2%	42	8.54%	79	16.06%	370	75.2%	HCR