| SRR5560729 | caryopsis | wild_type | 6.46 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 4.59 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.94 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.92 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.75 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 4.17 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.75 | HC |
| SRR1213691 | flower | wt | 4.79 | HC |
| SRR8240824 | leaf | wild_type | 2.99 | HC |
| SRR8240819 | leaf | wild_type | 3.40 | HC |
| SRR5856927 | leaf | control | 5.22 | HC |
| SRR5856929 | leaf | control | 3.57 | HC |
| SRR5856930 | leaf | salt | 3.09 | HC |
| SRR5856931 | leaf | salt | 3.23 | HC |
| SRR5856932 | leaf | salt | 2.40 | HC |
| SRR5856933 | leaf | control | 4.25 | HC |
| SRR5856934 | leaf | control | 3.92 | HC |
| SRR5856935 | leaf | control | 3.84 | HC |
| SRR5856936 | leaf | salt | 3.60 | HC |
| SRR5856937 | leaf | salt | 4.42 | HC |
| SRR5856938 | leaf | salt | 3.64 | HC |
| SRR5110432 | panicle | Dawn | 4.33 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.82 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.93 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.51 | HC |
| SRR5110446 | panicle | Dusk | 4.69 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.00 | HC |
| SRR5126147 | root | "mock,1_day" | 7.79 | HC |
| SRR5126148 | root | "mock,1_day" | 6.82 | HC |
| SRR5126149 | root | "mock,1_day" | 9.90 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.40 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 9.59 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 8.67 | HC |
| SRR5126153 | root | "mock,7_days" | 4.48 | HC |
| SRR5126155 | root | "mock,7_days" | 6.55 | HC |
| SRR5126157 | root | "mock,7_days" | 6.33 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.90 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.91 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.46 | HC |
| SRR5126165 | root | "mock,14_days" | 8.31 | HC |
| SRR5126167 | root | "mock,14_days" | 6.86 | HC |
| SRR5126169 | root | "mock,14_days" | 6.02 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.99 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.12 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.16 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.37 | HC |
| SRR4947484 | root | Al | 5.42 | HC |
| SRR4947490 | root | Al | 5.83 | HC |
| SRR4947506 | root | Al | 6.18 | HC |
| SRR6502103 | root | 100 mM NaCl | 5.94 | HC |
| SRR6502107 | root | control | 4.10 | HC |
| SRR1740429 | root_meristematic_zone | wt | 3.56 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.58 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.22 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.89 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.86 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.50 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.58 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.42 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.41 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 4.98 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.16 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.43 | HC |