Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HEP	Expression Capacity
Osa-phasi09g0761	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0755	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0757	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0759	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0756	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0758	273	99.64%	0	0.0%	1	0.36%	0.0%	MCR
Osa-phasi09g0760	273	99.64%	0	0.0%	1	0.36%	0.0%	MCR
Osa-phasi09g0714	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0715	273	99.64%	0	0.0%	1	0.36%	0.0%	MCR
Osa-phasi09g0716	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0717	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0719	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0720	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0718	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0721	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0768	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0766	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0767	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0769	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR
Osa-phasi09g0765	273	99.64%	1	0.36%	0	0.0%	0.0%	LCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

Osa-phasi09g0761

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0755

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0757

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0759

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0756

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0758

273

99.64%

0.0%

0.36%

0.0%

MCR

Osa-phasi09g0760

273

99.64%

0.0%

0.36%

0.0%

MCR

Osa-phasi09g0714

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0715

273

99.64%

0.0%

0.36%

0.0%

MCR

Osa-phasi09g0716

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0717

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0719

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0720

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0718

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0721

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0768

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0766

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0767

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0769

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0765

273

99.64%

0.36%

0.0%

LCR

phasiRNAs Expression Capacity