Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-phasi09g0763	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0764	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0762	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0710	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0711	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0712	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0713	273	99.64%	1	0.36%	0	0.0%	0	0.0%	LCR
Osa-phasi09g0307	246	89.78%	12	4.38%	16	5.84%	0	0.0%	MCR
Osa-phasi09g0309	262	95.62%	3	1.09%	9	3.28%	0	0.0%	MCR
Osa-phasi09g0312	263	95.99%	7	2.55%	4	1.46%	0	0.0%	MCR
Osa-phasi09g0313	270	98.54%	2	0.73%	2	0.73%	0	0.0%	MCR
Osa-phasi09g0304	245	89.42%	27	9.85%	2	0.73%	0	0.0%	MCR
Osa-phasi09g0305	246	89.78%	1	0.36%	27	9.85%	0	0.0%	MCR
Osa-phasi09g0306	243	88.69%	3	1.09%	15	5.47%	13	4.74%	HCR
Osa-phasi09g0308	260	94.89%	2	0.73%	7	2.55%	5	1.82%	HCR
Osa-phasi09g0310	242	88.32%	2	0.73%	13	4.74%	17	6.2%	HCR
Osa-phasi09g0311	270	98.54%	1	0.36%	3	1.09%	0	0.0%	MCR
Osa-phasi09g0314	272	99.27%	0	0.0%	2	0.73%	0	0.0%	MCR
Osa-phasi09g0318	260	94.89%	3	1.09%	4	1.46%	7	2.55%	HCR
Osa-phasi09g0322	245	89.42%	12	4.38%	15	5.47%	2	0.73%	HCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

Osa-phasi09g0763

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0764

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0762

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0710

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0711

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0712

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0713

273

99.64%

0.36%

0.0%

LCR

Osa-phasi09g0307

246

89.78%

4.38%

5.84%

0.0%

MCR

Osa-phasi09g0309

262

95.62%

1.09%

3.28%

0.0%

MCR

Osa-phasi09g0312

263

95.99%

2.55%

1.46%

0.0%

MCR

Osa-phasi09g0313

270

98.54%

0.73%

0.0%

MCR

Osa-phasi09g0304

245

89.42%

9.85%

0.73%

0.0%

MCR

Osa-phasi09g0305

246

89.78%

0.36%

9.85%

0.0%

MCR

Osa-phasi09g0306

243

88.69%

1.09%

5.47%

4.74%

HCR

Osa-phasi09g0308

260

94.89%

0.73%

2.55%

1.82%

HCR

Osa-phasi09g0310

242

88.32%

0.73%

4.74%

6.2%

HCR

Osa-phasi09g0311

270

98.54%

0.36%

1.09%

0.0%

MCR

Osa-phasi09g0314

272

99.27%

0.0%

0.73%

0.0%

MCR

Osa-phasi09g0318

260

94.89%

1.09%

1.46%

2.55%

HCR

Osa-phasi09g0322

245

89.42%

4.38%

5.47%

0.73%

HCR

phasiRNAs Expression Capacity