Browse: Expression Capacity

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
OSA-LNC107276746	1	0.2%	264	53.66%	203	41.26%	24	4.88%	HCR
OSA-LNC107276770	1	0.2%	251	51.02%	141	28.66%	99	20.12%	HCR
OSA-LNC107276798	1	0.2%	388	78.86%	103	20.93%	0	0.0%	MCR
OSA-LNC107276843	1	0.2%	361	73.37%	96	19.51%	34	6.91%	HCR
OSA-LNC107276866	1	0.2%	327	66.46%	119	24.19%	45	9.15%	HCR
OSA-LNC107276879	1	0.2%	451	91.67%	40	8.13%	0	0.0%	MCR
OSA-LNC107276921	1	0.2%	95	19.31%	3	0.61%	393	79.88%	HCR
OSA-LNC107276934	1	0.2%	6	1.22%	117	23.78%	368	74.8%	HCR
OSA-LNC107276936	1	0.2%	225	45.73%	124	25.2%	142	28.86%	HCR
OSA-LNC107276937	1	0.2%	336	68.29%	150	30.49%	5	1.02%	HCR
OSA-LNC107276963	1	0.2%	23	4.67%	265	53.86%	203	41.26%	HCR
OSA-LNC107276964	1	0.2%	14	2.85%	60	12.2%	417	84.76%	HCR
OSA-LNC107276968	1	0.2%	100	20.33%	283	57.52%	108	21.95%	HCR
OSA-LNC107276984	1	0.2%	471	95.73%	19	3.86%	1	0.2%	HCR
OSA-LNC107277086	1	0.2%	43	8.74%	122	24.8%	326	66.26%	HCR
OSA-LNC107277089	1	0.2%	477	96.95%	14	2.85%	0	0.0%	MCR
OSA-LNC107277114	1	0.2%	139	28.25%	248	50.41%	104	21.14%	HCR
OSA-LNC107277140	1	0.2%	455	92.48%	35	7.11%	1	0.2%	HCR
OSA-LNC107277143	1	0.2%	430	87.4%	55	11.18%	6	1.22%	HCR
OSA-LNC107277222	1	0.2%	467	94.92%	12	2.44%	12	2.44%	HCR

Name

NE_num

NEP

LE_num

LEP

ME_num

MEP

HE_num

HEP

Expression Capacity

OSA-LNC107276746

0.2%