LncRNA Genes Expression Capacity
total numbers: 11005
RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA
Name |
NE_num |
NEP |
LE_num |
LEP |
ME_num |
MEP |
HE_num |
HEP |
Expression Capacity |
OSA-LNCN7894 | 1 | 0.2% | 464 | 94.31% | 27 | 5.49% | 0 | 0.0% | MCR |
OSA-LNCN7895 | 1 | 0.2% | 414 | 84.15% | 73 | 14.84% | 4 | 0.81% | HCR |
OSA-LNCN7896 | 1 | 0.2% | 457 | 92.89% | 34 | 6.91% | 0 | 0.0% | MCR |
OSA-LNCN7897 | 1 | 0.2% | 6 | 1.22% | 27 | 5.49% | 458 | 93.09% | HCR |
OSA-LNCN7898 | 1 | 0.2% | 94 | 19.11% | 176 | 35.77% | 221 | 44.92% | HCR |