| SRR447130 | root | As(III) 20 uM | 46.04 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 143.66 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 131.44 | HC |
| SRR8258050 | leaf_sheath | R_bph | 76.83 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 27.58 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 180.02 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 82.66 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 82.54 | HC |
| SRR10690152 | leaf | IRBB5_0h | 1556.40 | HC |
| SRR6810106 | panicle | panicle | 7.98 | HC |
| SRR7058097 | leaf | rice_mock | 47.64 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 348.70 | HC |
| SRR7058098 | leaf | rice_RSV | 40.78 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 246.07 | HC |
| SRR10690151 | leaf | IRBB5_0h | 1065.94 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 32.15 | HC |
| SRR1061625 | panicle | Heat Stress | 7.90 | HC |
| SRR1061624 | panicle | Normal | 13.40 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 59.70 | HC |
| SRR1061622 | flag_leaf | Normal | 12.24 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 20.50 | HC |
| SRR1061620 | flag_leaf | Normal | 18.27 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 225.36 | HC |
| SRR10704058 | leaf | Glyphosate | 283.39 | HC |
| SRR447128 | root | As(III) 20 uM | 19.95 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 531.10 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 21.57 | HC |
| SRR1013787 | panicle | PA64s_PA | 24.46 | HC |
| SRR1013789 | panicle | 93-11_PA | 6.46 | HC |
| SRR1013788 | panicle | LYP9_PA | 15.87 | HC |
| SRR9070101 | shoot_base | WT_base | 6.70 | HC |
| SRR089619 | panicle | control | 37.93 | HC |
| SRR447135 | shoot | As(III) 20 uM | 47.69 | HC |
| SRR447134 | shoot | As(III) 80 uM | 33.11 | HC |
| SRR447133 | shoot | As(III) 20 uM | 40.67 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 31.80 | HC |
| SRR447131 | root | As(III) 80 uM | 25.72 | HC |
| SRR1849765 | leaf | Control 30min | 49.11 | HC |
| SRR1849767 | leaf | Control 30min | 53.51 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 50.08 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 84.42 | HC |
| SRR6498701 | leaf | "WT, Control" | 43.78 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 35.91 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 99.58 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 97.93 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 73.20 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 731.36 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 504.93 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 261.25 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 466.65 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 120.17 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 338.32 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 70.04 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 303.31 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 358.55 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 680.85 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 30.27 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 9.25 | HC |
| SRR447129 | root | As(III) 80 uM | 19.65 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 19.83 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 75.06 | HC |
| SRR1849773 | leaf | Control 120min | 57.64 | HC |
| SRR1849772 | leaf | Control 120min | 34.80 | HC |
| SRR1849771 | leaf | Control 120min | 64.22 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 51.67 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 36.21 | HC |
| SRR3130370 | leaf | control 8 hour | 23.74 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 32.81 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 30.18 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 38.81 | HC |
| SRR6365689 | seedling | Wild type | 16.63 | HC |
| SRR447136 | shoot | As(III) 80 uM | 33.25 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 24.97 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 78.01 | HC |
| SRR10704060 | leaf | Glyphosate | 271.96 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 36.44 | HC |
| SRR3140952 | leaf | "45C, 0h" | 13.57 | HC |
| SRR976171 | lamina_joint | wild type | 119.15 | HC |
| SRR3130369 | leaf | control 8 hour | 35.07 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 17.39 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 10.33 | HC |
| SRR9070100 | shoot_base | WT_base | 4.50 | HC |
| SRR3130365 | leaf | control 0 hour | 42.02 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 16.24 | HC |
| SRR3130366 | leaf | control 0 hour | 18.20 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 2.54 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 84.20 | HC |
| SRR2862363 | leaf | mock leaf cells | 54.35 | HC |
| SRR10704055 | leaf | CK | 161.35 | HC |
| SRR10704057 | leaf | CK | 458.48 | HC |
| SRR10704056 | leaf | CK | 199.18 | HC |
| SRR10704059 | leaf | Glyphosate | 48.96 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 8.71 | HC |
| SRR6498699 | leaf | "WT, Control" | 49.92 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 15.85 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 8.17 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 104.84 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 337.11 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 177.11 | HC |
| SRR10690143 | leaf | IR24_0h | 1522.41 | HC |
| SRR10690142 | leaf | IR24_0h | 23.96 | HC |
| SRR2646852 | panicle | FP | 74.26 | HC |
| SRR2646853 | panicle | FP | 93.19 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 18.03 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 390.50 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 30.86 | HC |
| SRR2646854 | panicle | SP | 68.90 | HC |
| SRR2646855 | panicle | SP | 107.61 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 81.04 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 13.32 | HC |
| SRR6365690 | seedling | Wild type | 19.01 | HC |
| SRR6365692 | panicle | Wild type | 36.30 | HC |
| SRR6365693 | panicle | Wild type | 16.69 | HC |
| SRR6365694 | panicle | Wild type | 17.76 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 86.27 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 23.34 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 53.54 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 49.72 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 107.80 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 84.86 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 55.65 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 199.95 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 749.19 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 124.61 | HC |
| SRR6365691 | panicle | Wild type | 29.20 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 791.52 | HC |
| SRR10690153 | leaf | IRBB5_0h | 666.55 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 463.95 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1186.08 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 429.79 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 683.98 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 358.44 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 182.41 | HC |
| SRR3110556 | shoot | shoot control | 41.57 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 61.78 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 59.80 | HC |
| SRR1061616 | panicle | Normal | 8.91 | HC |
| SRR1061617 | panicle | Heat Stress | 15.08 | HC |
| SRR1061614 | panicle | Normal | 9.73 | HC |
| SRR1061615 | panicle | Heat Stress | 14.43 | HC |
| SRR1061612 | panicle | Normal | 13.78 | HC |
| SRR1061613 | panicle | Heat Stress | 23.58 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 26.35 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 29.85 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 104.87 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 63.84 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 58.34 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 41.32 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 36.66 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 44.67 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 9.82 | HC |
| SRR3140954 | leaf | "45C, 12h" | 39.32 | HC |
| SRR089621 | panicle | cold | 53.18 | HC |
| SRR089620 | panicle | drought | 50.12 | HC |
| SRR3140957 | leaf | "45C, 24h" | 223.89 | HC |
| SRR089622 | panicle | salt | 20.19 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 16.99 | HC |
| SRR2544786 | embryo | dry seed | 11.02 | HC |
| SRR3140956 | leaf | "45C, 24h" | 456.71 | HC |
| SRR3140953 | leaf | "45C, 0h" | 33.91 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 58.56 | HC |
| SRR10956502 | panicle | WT | 23.04 | HC |
| SRR10956501 | panicle | WT | 23.87 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 118.47 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 691.95 | HC |
| SRR8258048 | leaf_sheath | R_bph | 81.63 | HC |
| SRR1740023 | seedling | IR64-Control | 14.91 | HC |
| SRR1740025 | seedling | PK-Control | 16.14 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 34.50 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 34.06 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 39.33 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 112.84 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 16.61 | HC |
| SRR5940086 | panicle | Wild type | 20.70 | HC |
| SRR8258051 | leaf_sheath | R_bph | 64.61 | HC |