| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 4220.44 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 6328.20 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 23.27 | HC |
| SRR8258050 | leaf_sheath | R_bph | 4352.70 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 735.86 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 4584.41 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 5194.78 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 5880.62 | HC |
| SRR10690152 | leaf | IRBB5_0h | 312.11 | HC |
| SRR6810106 | panicle | panicle | 61.00 | HC |
| SRR7058097 | leaf | rice_mock | 1930.28 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 67.90 | HC |
| SRR7058098 | leaf | rice_RSV | 1351.11 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 63.85 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 414.89 | HC |
| SRR2154077 | seedling | KDM105_seedling | 439.23 | HC |
| SRR2154074 | seed | Nipponbare_seed | 267.80 | HC |
| SRR10690151 | leaf | IRBB5_0h | 236.75 | HC |
| SRR2154072 | seed | Rathuwee_seed | 62.86 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 266.91 | HC |
| SRR2154070 | seed | Guangluai4_seed | 293.36 | HC |
| SRR2154071 | seed | KDM105_seed | 133.11 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 22.29 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 86.06 | HC |
| SRR1061625 | panicle | Heat Stress | 147.03 | HC |
| SRR1061624 | panicle | Normal | 158.53 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 188.13 | HC |
| SRR1061622 | flag_leaf | Normal | 233.52 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 354.97 | HC |
| SRR1061620 | flag_leaf | Normal | 194.35 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 149.31 | HC |
| SRR10704058 | leaf | Glyphosate | 113.70 | HC |
| SRR447128 | root | As(III) 20 uM | 26.00 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 185.94 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 83.26 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 287.13 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 433.70 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 369.70 | HC |
| SRR1013787 | panicle | PA64s_PA | 1550.24 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 367.79 | HC |
| SRR504363 | leaf | 93-11 X NPB | 575.68 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 21.19 | HC |
| SRR1013789 | panicle | 93-11_PA | 534.56 | HC |
| SRR1013788 | panicle | LYP9_PA | 818.29 | HC |
| SRR9070101 | shoot_base | WT_base | 164.25 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 1037.05 | HC |
| SRR6810105 | panicle | panicle | 52.47 | HC |
| SRR089619 | panicle | control | 15.92 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 37.10 | HC |
| SRR447130 | root | As(III) 20 uM | 82.88 | HC |
| SRR1849765 | leaf | Control 30min | 282.06 | HC |
| SRR1849767 | leaf | Control 30min | 364.96 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 82.75 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 439.23 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 707.56 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 412.32 | HC |
| SRR6498701 | leaf | "WT, Control" | 430.84 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 648.40 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 184.54 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 99.96 | HC |
| SRR3203907 | leaf | WT | 75.27 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 353.61 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 83.50 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 47.50 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 33.24 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 53.30 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 14.66 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 32.65 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 42.76 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 36.56 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 42.75 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 61.02 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 117.66 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 271.67 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 376.45 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 480.33 | HC |
| SRR447129 | root | As(III) 80 uM | 56.54 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 106.04 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 374.66 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 477.04 | HC |
| SRR1849773 | leaf | Control 120min | 345.23 | HC |
| SRR1849772 | leaf | Control 120min | 318.15 | HC |
| SRR1849771 | leaf | Control 120min | 451.08 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 346.49 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 103.03 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 74.24 | HC |
| SRR3130370 | leaf | control 8 hour | 136.08 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 151.26 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 59.15 | HC |
| SRR7058096 | leaf | rice_mock | 892.79 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 8.39 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 8.50 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 863.05 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 101.51 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 138.35 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 955.36 | HC |
| SRR6365689 | seedling | Wild type | 48.21 | HC |
| SRR447136 | shoot | As(III) 80 uM | 42.48 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 214.02 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 1214.79 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 93.26 | HC |
| SRR10704060 | leaf | Glyphosate | 85.48 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 874.79 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 34.14 | HC |
| SRR2154075 | seed | Taipei309_seed | 342.97 | HC |
| SRR976171 | lamina_joint | wild type | 151.03 | HC |
| SRR4098208 | root | No treatment | 177.80 | HC |
| SRR089774 | panicle | wild-type | 27.30 | HC |
| SRR089772 | panicle | wild-type | 26.68 | HC |
| SRR4098209 | leaf | No treatment | 45.01 | HC |
| SRR3130369 | leaf | control 8 hour | 138.81 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 84.34 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 120.32 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 421.73 | HC |
| SRR9070100 | shoot_base | WT_base | 162.77 | HC |
| SRR4098205 | seedling | Heat (50C) | 41.00 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 219.99 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 127.85 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 338.62 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 252.88 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 157.25 | HC |
| SRR3130365 | leaf | control 0 hour | 196.38 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 145.59 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 75.32 | HC |
| SRR3130366 | leaf | control 0 hour | 108.42 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 25.48 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 26.38 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 17.52 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 26.44 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 25.58 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 27.28 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 11.82 | HC |
| SRR2862364 | leaf | mock leaf cells | 31.21 | HC |
| SRR2862365 | leaf | mock leaf cells | 24.67 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 98.44 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 50.07 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 68.98 | HC |
| SRR2862363 | leaf | mock leaf cells | 86.89 | HC |
| SRR8649147 | panicle | panicle tissue | 595.40 | HC |
| SRR4098207 | panicle | No treatment | 57.90 | HC |
| SRR10704055 | leaf | CK | 40.49 | HC |
| SRR10704057 | leaf | CK | 131.62 | HC |
| SRR10704056 | leaf | CK | 52.68 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 255.87 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 95.35 | HC |
| SRR9070102 | shoot_base | WT_base | 93.33 | HC |
| SRR6498699 | leaf | "WT, Control" | 411.58 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 447.95 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 747.39 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 302.77 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 260.19 | HC |
| SRR10690144 | leaf | IR24_0h | 91.03 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 83.12 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 145.25 | HC |
| SRR10690143 | leaf | IR24_0h | 264.19 | HC |
| SRR10690142 | leaf | IR24_0h | 251.20 | HC |
| SRR2646852 | panicle | FP | 548.24 | HC |
| SRR2646853 | panicle | FP | 349.19 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 126.39 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 232.64 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 127.99 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 137.22 | HC |
| SRR2646854 | panicle | SP | 409.35 | HC |
| SRR2646855 | panicle | SP | 302.89 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 88.32 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 45.37 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 84.95 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 21.87 | HC |
| SRR4098203 | seedling | No treatment | 14.10 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 47.63 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 34.05 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 36.27 | HC |
| SRR6365690 | seedling | Wild type | 36.60 | HC |
| SRR6365692 | panicle | Wild type | 50.99 | HC |
| SRR6365693 | panicle | Wild type | 113.91 | HC |
| SRR6365694 | panicle | Wild type | 113.83 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 645.43 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 75.28 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 77.88 | HC |
| SRR6810101 | seedling | seedling | 290.67 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 3213.36 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 3708.58 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 45.47 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 37.74 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 3111.76 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 6165.21 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 11.25 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 75.22 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 128.25 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 80.85 | HC |
| SRR1849784 | root | Control 120min | 422.59 | HC |
| SRR6365691 | panicle | Wild type | 44.90 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 67.69 | HC |
| SRR10690153 | leaf | IRBB5_0h | 182.41 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 27.52 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 88.32 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 47.86 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 167.15 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 49.06 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 25.14 | HC |
| SRR3110556 | shoot | shoot control | 376.98 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 554.66 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 109.64 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 721.13 | HC |
| SRR1061616 | panicle | Normal | 96.64 | HC |
| SRR1061617 | panicle | Heat Stress | 249.31 | HC |
| SRR1061614 | panicle | Normal | 120.03 | HC |
| SRR1061615 | panicle | Heat Stress | 297.58 | HC |
| SRR1061612 | panicle | Normal | 161.18 | HC |
| SRR1061613 | panicle | Heat Stress | 171.37 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 77.66 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 369.76 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 142.09 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 187.99 | HC |
| SRR1061618 | flag_leaf | Normal | 122.48 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 262.01 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 157.31 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 357.56 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 181.94 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 78.05 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 3092.89 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 2808.13 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 2860.21 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 704.32 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 223.17 | HC |
| SRR3140954 | leaf | "45C, 12h" | 13.81 | HC |
| SRR089621 | panicle | cold | 21.68 | HC |
| SRR089620 | panicle | drought | 14.22 | HC |
| SRR3140957 | leaf | "45C, 24h" | 51.35 | HC |
| SRR504360 | leaf | Nipponbare | 341.90 | HC |
| SRR504361 | leaf | Nov-93 | 543.52 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 601.98 | HC |
| SRR2544786 | embryo | dry seed | 278.53 | HC |
| SRR4098172 | seedling | Cold (4C) | 65.64 | HC |
| SRR3140956 | leaf | "45C, 24h" | 24.34 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 237.92 | HC |
| SRR3140953 | leaf | "45C, 0h" | 16.36 | HC |
| SRR6810102 | seedling | seedling | 390.01 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 3395.47 | HC |
| SRR10956502 | panicle | WT | 216.89 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 31.69 | HC |
| SRR10956501 | panicle | WT | 217.14 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 3824.79 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 78.55 | HC |
| SRR8258048 | leaf_sheath | R_bph | 4357.01 | HC |
| SRR1740023 | seedling | IR64-Control | 165.04 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 337.32 | HC |
| SRR1740025 | seedling | PK-Control | 122.16 | HC |
| SRR1740024 | seedling | N22-Control | 81.42 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 967.44 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 965.15 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 405.18 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 354.62 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 4258.23 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 63.11 | HC |
| SRR1654490 | leaf | wild type | 94.13 | HC |
| SRR3110557 | shoot | shoot treated | 347.94 | HC |
| SRR5940086 | panicle | Wild type | 453.60 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 213.79 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 187.93 | HC |
| SRR8258051 | leaf_sheath | R_bph | 4140.90 | HC |
| SRR504362 | leaf | NPB X 93-11 | 268.33 | HC |