| SRR2154071 | seed | KDM105_seed | 157.22 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 518.66 | HC |
| SRR3140955 | leaf | "45C, 12h" | 10.08 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 716.50 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 50.24 | HC |
| SRR8258050 | leaf_sheath | R_bph | 650.19 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 84.68 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 623.36 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 696.52 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 544.71 | HC |
| SRR10690152 | leaf | IRBB5_0h | 4112.89 | HC |
| SRR7058097 | leaf | rice_mock | 493.23 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 54.94 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 268.61 | HC |
| SRR7058098 | leaf | rice_RSV | 287.33 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3435.00 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 164.38 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 2851.66 | HC |
| SRR2154077 | seedling | KDM105_seedling | 1236.28 | HC |
| SRR2154074 | seed | Nipponbare_seed | 150.68 | HC |
| SRR10690151 | leaf | IRBB5_0h | 5804.16 | HC |
| SRR2154072 | seed | Rathuwee_seed | 156.94 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 243.40 | HC |
| SRR2154070 | seed | Guangluai4_seed | 235.51 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 1057.75 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2058.26 | HC |
| SRR1061625 | panicle | Heat Stress | 7.09 | HC |
| SRR1061624 | panicle | Normal | 27.93 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 79.58 | HC |
| SRR1061622 | flag_leaf | Normal | 18.87 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 59.18 | HC |
| SRR1061620 | flag_leaf | Normal | 23.12 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3919.23 | HC |
| SRR10704058 | leaf | Glyphosate | 301.03 | HC |
| SRR447128 | root | As(III) 20 uM | 16.83 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 4600.17 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 512.40 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 80.96 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 1720.20 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 1267.16 | HC |
| SRR1013787 | panicle | PA64s_PA | 2923.77 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 2996.14 | HC |
| SRR504363 | leaf | 93-11 X NPB | 1239.30 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 129.16 | HC |
| SRR1013789 | panicle | 93-11_PA | 452.67 | HC |
| SRR1013788 | panicle | LYP9_PA | 691.17 | HC |
| SRR9070101 | shoot_base | WT_base | 13.09 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 2548.23 | HC |
| SRR6810105 | panicle | panicle | 6.77 | HC |
| SRR089619 | panicle | control | 689.91 | HC |
| SRR447135 | shoot | As(III) 20 uM | 60.57 | HC |
| SRR447134 | shoot | As(III) 80 uM | 33.90 | HC |
| SRR447133 | shoot | As(III) 20 uM | 65.32 | HC |
| SRR447131 | root | As(III) 80 uM | 31.89 | HC |
| SRR447130 | root | As(III) 20 uM | 47.78 | HC |
| SRR1849765 | leaf | Control 30min | 248.27 | HC |
| SRR1849767 | leaf | Control 30min | 307.37 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 52.82 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 294.44 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 33.02 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 70.20 | HC |
| SRR6498701 | leaf | "WT, Control" | 63.16 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 68.64 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 815.85 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 33.01 | HC |
| SRR3203907 | leaf | WT | 6955.07 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 77.61 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 264.13 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 222.83 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 454.08 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 674.91 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 218.32 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 581.77 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 400.49 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 352.98 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 181.65 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 538.08 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 1114.40 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 83.13 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 126.87 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 175.83 | HC |
| SRR447129 | root | As(III) 80 uM | 11.02 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 89.23 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 267.16 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 326.36 | HC |
| SRR1849773 | leaf | Control 120min | 321.63 | HC |
| SRR1849772 | leaf | Control 120min | 277.85 | HC |
| SRR1849771 | leaf | Control 120min | 231.20 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 369.15 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 4909.26 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 1470.59 | HC |
| SRR3130370 | leaf | control 8 hour | 4141.47 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 4944.48 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 1517.43 | HC |
| SRR7058096 | leaf | rice_mock | 330.65 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 3030.05 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 28.12 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 102.20 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 85.62 | HC |
| SRR447136 | shoot | As(III) 80 uM | 35.10 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 89.04 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 103.02 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 27.19 | HC |
| SRR10704060 | leaf | Glyphosate | 511.97 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 70.13 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 112.41 | HC |
| SRR2154075 | seed | Taipei309_seed | 245.30 | HC |
| SRR3140952 | leaf | "45C, 0h" | 59.18 | HC |
| SRR976171 | lamina_joint | wild type | 108.32 | HC |
| SRR4098208 | root | No treatment | 44.69 | HC |
| SRR089774 | panicle | wild-type | 491.31 | HC |
| SRR089772 | panicle | wild-type | 569.75 | HC |
| SRR4098209 | leaf | No treatment | 274.57 | HC |
| SRR3130369 | leaf | control 8 hour | 3901.51 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 3291.66 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 90.85 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 171.21 | HC |
| SRR9070100 | shoot_base | WT_base | 12.00 | HC |
| SRR4098205 | seedling | Heat (50C) | 127.56 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 44.59 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 71.56 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 99.50 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 87.96 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 70.68 | HC |
| SRR3130365 | leaf | control 0 hour | 4324.76 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 114.87 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 3496.02 | HC |
| SRR3130366 | leaf | control 0 hour | 4879.03 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 3.66 | HC |
| SRR2862364 | leaf | mock leaf cells | 2616.62 | HC |
| SRR2862365 | leaf | mock leaf cells | 1311.23 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 15933.12 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 291.29 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 208.97 | HC |
| SRR2862363 | leaf | mock leaf cells | 10554.65 | HC |
| SRR8649147 | panicle | panicle tissue | 6.76 | HC |
| SRR4098207 | panicle | No treatment | 132.27 | HC |
| SRR10704055 | leaf | CK | 208.37 | HC |
| SRR10704057 | leaf | CK | 710.15 | HC |
| SRR10704056 | leaf | CK | 219.80 | HC |
| SRR10704059 | leaf | Glyphosate | 72.24 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 36.86 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 106.42 | HC |
| SRR9070102 | shoot_base | WT_base | 10.27 | HC |
| SRR6498699 | leaf | "WT, Control" | 53.04 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 1682.65 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 2875.61 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 112.82 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 5790.58 | HC |
| SRR10690144 | leaf | IR24_0h | 2566.07 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4209.61 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 10528.63 | HC |
| SRR10690143 | leaf | IR24_0h | 6820.58 | HC |
| SRR10690142 | leaf | IR24_0h | 4251.34 | HC |
| SRR2646852 | panicle | FP | 35.37 | HC |
| SRR2646853 | panicle | FP | 40.22 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 34.71 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 74.49 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 5688.76 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3727.10 | HC |
| SRR2646854 | panicle | SP | 22.38 | HC |
| SRR2646855 | panicle | SP | 32.55 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 33.58 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 354.45 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 138.97 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 192.80 | HC |
| SRR4098203 | seedling | No treatment | 62.98 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 69.06 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 192.36 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 195.96 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 74.31 | HC |
| SRR6365693 | panicle | Wild type | 11.88 | HC |
| SRR6365694 | panicle | Wild type | 11.22 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 46.67 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 30.85 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 37.01 | HC |
| SRR6810101 | seedling | seedling | 50.43 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 477.14 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 501.35 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 222.34 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 100.17 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 338.50 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 583.60 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 167.46 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 30.86 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 104.77 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 5293.33 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3429.35 | HC |
| SRR1849784 | root | Control 120min | 19.87 | HC |
| SRR6365691 | panicle | Wild type | 12.64 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 649.43 | HC |
| SRR10690153 | leaf | IRBB5_0h | 1102.32 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 135.54 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 136.07 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 90.54 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2917.10 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 153.39 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 69.67 | HC |
| SRR3110556 | shoot | shoot control | 3146.59 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 675.88 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 83.48 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1300.39 | HC |
| SRR1061616 | panicle | Normal | 10.81 | HC |
| SRR1061617 | panicle | Heat Stress | 18.84 | HC |
| SRR1061614 | panicle | Normal | 9.78 | HC |
| SRR1061615 | panicle | Heat Stress | 24.93 | HC |
| SRR1061612 | panicle | Normal | 40.21 | HC |
| SRR1061613 | panicle | Heat Stress | 36.22 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 25.66 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 108.96 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 186.00 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 38.48 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 48.61 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 236.25 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 390.09 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 70.95 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 70.10 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 258.02 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 308.60 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 313.69 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 184.03 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 100.72 | HC |
| SRR3140954 | leaf | "45C, 12h" | 106.89 | HC |
| SRR089621 | panicle | cold | 1354.72 | HC |
| SRR089620 | panicle | drought | 1494.40 | HC |
| SRR3140957 | leaf | "45C, 24h" | 410.70 | HC |
| SRR089622 | panicle | salt | 455.81 | HC |
| SRR504360 | leaf | Nipponbare | 1177.79 | HC |
| SRR504361 | leaf | Nov-93 | 3104.00 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 227.23 | HC |
| SRR2544786 | embryo | dry seed | 156.91 | HC |
| SRR4098172 | seedling | Cold (4C) | 182.70 | HC |
| SRR3140956 | leaf | "45C, 24h" | 58.82 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 75.29 | HC |
| SRR3140953 | leaf | "45C, 0h" | 83.49 | HC |
| SRR6810102 | seedling | seedling | 71.13 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 390.48 | HC |
| SRR10956502 | panicle | WT | 37.38 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 848.36 | HC |
| SRR10956501 | panicle | WT | 43.49 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 1820.48 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 152.35 | HC |
| SRR8258048 | leaf_sheath | R_bph | 725.98 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 2785.49 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 59.06 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 52.52 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 111.69 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 33.62 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 376.52 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 17.21 | HC |
| SRR1654490 | leaf | wild type | 13113.48 | HC |
| SRR3110557 | shoot | shoot treated | 3708.15 | HC |
| SRR5940086 | panicle | Wild type | 50.66 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 1050.69 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 2022.18 | HC |
| SRR8258051 | leaf_sheath | R_bph | 702.81 | HC |
| SRR504362 | leaf | NPB X 93-11 | 3547.62 | HC |