Browse: Expression Capacity

miRNAs Expression Capacity

total numbers: 1259

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

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Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
osa-miR5821_miRbase	171	62.41%	67	24.45%	36	13.14%	0	0.0%	MCR
osa-miR5822_miRbase	224	81.75%	5	1.82%	40	14.6%	5	1.82%	HCR
osa-miR5824_miRbase	127	46.35%	99	36.13%	48	17.52%	0	0.0%	MCR
osa-miR5826_miRbase	160	58.39%	86	31.39%	27	9.85%	1	0.36%	HCR
osa-miR5829_miRbase	211	77.01%	62	22.63%	1	0.36%	0	0.0%	MCR
osa-miR5830_miRbase	182	66.42%	66	24.09%	26	9.49%	0	0.0%	MCR
osa-miR5831_miRbase	137	50.0%	60	21.9%	77	28.1%	0	0.0%	MCR
osa-miR5832_miRbase	241	87.96%	19	6.93%	14	5.11%	0	0.0%	MCR
osa-miR5836_miRbase	205	74.82%	8	2.92%	43	15.69%	18	6.57%	HCR
osa-miR5837.1_miRbase	221	80.66%	7	2.55%	23	8.39%	23	8.39%	HCR
osa-miR5837.2_miRbase	220	80.29%	20	7.3%	34	12.41%	0	0.0%	MCR
osa-miR6245_miRbase	217	79.2%	57	20.8%	0	0.0%	0	0.0%	LCR
osa-miR6245b-3p_miRbase	99	36.13%	96	35.04%	79	28.83%	0	0.0%	MCR
osa-miR6245b-5p_miRbase	92	33.58%	80	29.2%	100	36.5%	2	0.73%	HCR
osa-miR6246_miRbase	72	26.28%	92	33.58%	110	40.15%	0	0.0%	MCR
osa-miR6248_miRbase	38	13.87%	74	27.01%	162	59.12%	0	0.0%	MCR
osa-miR6249a_miRbase	21	7.66%	17	6.2%	200	72.99%	36	13.14%	HCR
osa-miR6249b_miRbase	21	7.66%	17	6.2%	200	72.99%	36	13.14%	HCR
osa-miR6250_miRbase	68	24.82%	86	31.39%	116	42.34%	4	1.46%	HCR
osa-miR6252_miRbase	198	72.26%	48	17.52%	28	10.22%	0	0.0%	MCR
osa-miR6253_miRbase	145	52.92%	90	32.85%	39	14.23%	0	0.0%	MCR
osa-miR6254_miRbase	64	23.36%	90	32.85%	119	43.43%	1	0.36%	HCR
osa-miR6255_miRbase	181	66.06%	78	28.47%	15	5.47%	0	0.0%	MCR
osa-miR7692-3p_miRbase	77	28.1%	75	27.37%	122	44.53%	0	0.0%	MCR
osa-miR7692-5p_miRbase	181	66.06%	70	25.55%	23	8.39%	0	0.0%	MCR
osa-miR7693-3p_miRbase	52	18.98%	45	16.42%	175	63.87%	2	0.73%	HCR
osa-miR7693-5p_miRbase	66	24.09%	56	20.44%	152	55.47%	0	0.0%	MCR
osa-miR7694-3p_miRbase	36	13.14%	38	13.87%	194	70.8%	6	2.19%	HCR
osa-miR7694-5p_miRbase	66	24.09%	62	22.63%	141	51.46%	5	1.82%	HCR
osa-miR7695-3p_miRbase	145	52.92%	33	12.04%	88	32.12%	8	2.92%	HCR
osa-miR7695-5p_miRbase	112	40.88%	34	12.41%	124	45.26%	4	1.46%	HCR
osa-miR810a_miRbase	85	31.02%	80	29.2%	106	38.69%	3	1.09%	HCR
osa-miR810b.1_miRbase	7	2.55%	13	4.74%	170	62.04%	84	30.66%	HCR
osa-miR810b.2_miRbase	39	14.23%	41	14.96%	140	51.09%	54	19.71%	HCR
osa-miR812h_miRbase	0	0.0%	4	1.46%	132	48.18%	138	50.36%	HCR
osa-miR812k_miRbase	24	8.76%	21	7.66%	176	64.23%	53	19.34%	HCR
osa-miR812l_miRbase	24	8.76%	21	7.66%	176	64.23%	53	19.34%	HCR
osa-miR812n-5p_miRbase	7	2.55%	7	2.55%	222	81.02%	38	13.87%	HCR
osa-miR812o-3p_miRbase	62	22.63%	81	29.56%	131	47.81%	0	0.0%	MCR
osa-miR812o-5p_miRbase	70	25.55%	112	40.88%	92	33.58%	0	0.0%	MCR
osa-miR812q_miRbase	96	35.04%	42	15.33%	134	48.91%	2	0.73%	HCR
osa-miR812r_miRbase	100	36.5%	30	10.95%	140	51.09%	4	1.46%	HCR
osa-miR812s_miRbase	12	4.38%	22	8.03%	235	85.77%	5	1.82%	HCR
osa-miR812t_miRbase	20	7.3%	33	12.04%	195	71.17%	26	9.49%	HCR
osa-miR812u_miRbase	22	8.03%	34	12.41%	194	70.8%	24	8.76%	HCR
osa-miR814a_miRbase	17	6.2%	39	14.23%	217	79.2%	1	0.36%	HCR
osa-miR814b_miRbase	17	6.2%	39	14.23%	217	79.2%	1	0.36%	HCR
osa-miR814c_miRbase	32	11.68%	72	26.28%	170	62.04%	0	0.0%	MCR
osa-miR815a_miRbase	142	51.82%	88	32.12%	44	16.06%	0	0.0%	MCR
osa-miR816_miRbase	229	83.58%	44	16.06%	1	0.36%	0	0.0%	MCR
osa-miR817_miRbase	108	39.42%	107	39.05%	59	21.53%	0	0.0%	MCR
osa-miR818a_miRbase	221	80.66%	50	18.25%	3	1.09%	0	0.0%	MCR
osa-miR818f_miRbase	200	72.99%	26	9.49%	46	16.79%	2	0.73%	HCR
osa-miR820a_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR820b_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR820c_miRbase	3	1.09%	2	0.73%	26	9.49%	243	88.69%	HCR
osa-miR821a_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR
osa-miR821b_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR
osa-miR821c_miRbase	226	82.48%	30	10.95%	18	6.57%	0	0.0%	MCR