| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 3.40 | MC |
| SRR3140955 | leaf | "45C, 12h" | 2.62 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 2.13 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 0.60 | MC |
| SRR8258050 | leaf_sheath | R_bph | 1.49 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 9.61 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 2.97 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 5.93 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 2.73 | MC |
| SRR7058097 | leaf | rice_mock | 2.15 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 0.30 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 1.00 | MC |
| SRR7058098 | leaf | rice_RSV | 3.93 | MC |
| SRR2154074 | seed | Nipponbare_seed | 3.66 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 2.34 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.50 | MC |
| SRR1061625 | panicle | Heat Stress | 0.48 | MC |
| SRR1061624 | panicle | Normal | 0.32 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.61 | MC |
| SRR1061622 | flag_leaf | Normal | 3.92 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 2.44 | MC |
| SRR1061620 | flag_leaf | Normal | 2.58 | MC |
| SRR10704058 | leaf | Glyphosate | 3.54 | MC |
| SRR447128 | root | As(III) 20 uM | 2.25 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.30 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.91 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.31 | MC |
| SRR9070101 | shoot_base | WT_base | 2.72 | MC |
| SRR089619 | panicle | control | 0.33 | MC |
| SRR447135 | shoot | As(III) 20 uM | 2.90 | MC |
| SRR447134 | shoot | As(III) 80 uM | 4.59 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 2.99 | MC |
| SRR447130 | root | As(III) 20 uM | 3.46 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.50 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 0.96 | MC |
| SRR6498701 | leaf | "WT, Control" | 1.16 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.47 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 1.30 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 0.73 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 1.18 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 0.69 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 0.98 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 1.64 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.48 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 0.91 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1.69 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 0.95 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 1.42 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 2.04 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 2.81 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.44 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.02 | MC |
| SRR447129 | root | As(III) 80 uM | 1.20 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1.06 | MC |
| SRR1849772 | leaf | Control 120min | 1.83 | MC |
| SRR7058096 | leaf | rice_mock | 3.06 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.23 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.65 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 11.72 | MC |
| SRR6365689 | seedling | Wild type | 0.28 | MC |
| SRR447136 | shoot | As(III) 80 uM | 2.90 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.51 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 10.48 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.72 | MC |
| SRR10704060 | leaf | Glyphosate | 0.93 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 9.67 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.65 | MC |
| SRR2154075 | seed | Taipei309_seed | 2.50 | MC |
| SRR3140952 | leaf | "45C, 0h" | 6.20 | MC |
| SRR976171 | lamina_joint | wild type | 1.36 | MC |
| SRR4098208 | root | No treatment | 1.26 | MC |
| SRR089774 | panicle | wild-type | 3.70 | MC |
| SRR089772 | panicle | wild-type | 3.24 | MC |
| SRR4098209 | leaf | No treatment | 1.88 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.68 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.21 | MC |
| SRR9070100 | shoot_base | WT_base | 3.27 | MC |
| SRR4098205 | seedling | Heat (50C) | 2.67 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.89 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.72 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.65 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.40 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.47 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.47 | MC |
| SRR2862364 | leaf | mock leaf cells | 3.27 | MC |
| SRR2862365 | leaf | mock leaf cells | 2.28 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 6.61 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 2.40 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 2.11 | MC |
| SRR2862363 | leaf | mock leaf cells | 4.16 | MC |
| SRR8649147 | panicle | panicle tissue | 0.56 | MC |
| SRR4098207 | panicle | No treatment | 0.72 | MC |
| SRR10704055 | leaf | CK | 12.47 | MC |
| SRR10704057 | leaf | CK | 7.68 | MC |
| SRR10704056 | leaf | CK | 4.75 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 1.75 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.63 | MC |
| SRR9070102 | shoot_base | WT_base | 2.27 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.41 | MC |
| SRR2646853 | panicle | FP | 10.99 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.52 | MC |
| SRR2646854 | panicle | SP | 2.49 | MC |
| SRR2646855 | panicle | SP | 3.75 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 0.43 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 0.45 | MC |
| SRR4098203 | seedling | No treatment | 5.69 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.77 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.30 | MC |
| SRR6365693 | panicle | Wild type | 0.33 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1.30 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1.93 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1.34 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.75 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 2.77 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 5.70 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.38 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.49 | MC |
| SRR6365691 | panicle | Wild type | 0.88 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 2.12 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 1.89 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 2.71 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 1.63 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 0.96 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.62 | MC |
| SRR3110556 | shoot | shoot control | 3.17 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1.05 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.99 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 2.29 | MC |
| SRR1061616 | panicle | Normal | 0.24 | MC |
| SRR1061617 | panicle | Heat Stress | 0.30 | MC |
| SRR1061614 | panicle | Normal | 0.26 | MC |
| SRR1061615 | panicle | Heat Stress | 0.58 | MC |
| SRR1061612 | panicle | Normal | 0.84 | MC |
| SRR1061613 | panicle | Heat Stress | 0.73 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.35 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.43 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 2.64 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 0.61 | MC |
| SRR9937395 | spikelet | sRNA basal spikelets | 0.40 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 0.61 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.22 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 1.20 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 2.21 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1.99 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1.15 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.85 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.57 | MC |
| SRR089621 | panicle | cold | 0.60 | MC |
| SRR089620 | panicle | drought | 0.48 | MC |
| SRR089622 | panicle | salt | 0.54 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.75 | MC |
| SRR2544786 | embryo | dry seed | 0.62 | MC |
| SRR4098172 | seedling | Cold (4C) | 2.03 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.12 | MC |
| SRR3140953 | leaf | "45C, 0h" | 5.67 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 1.98 | MC |
| SRR10956502 | panicle | WT | 0.64 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 1.84 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 3.30 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 1.81 | MC |
| SRR8258048 | leaf_sheath | R_bph | 3.13 | MC |
| SRR1740023 | seedling | IR64-Control | 4.62 | MC |
| SRR1740025 | seedling | PK-Control | 3.93 | MC |
| SRR1740024 | seedling | N22-Control | 1.28 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 10.64 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 14.78 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.26 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.46 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 2.68 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.70 | MC |
| SRR1654490 | leaf | wild type | 12.39 | MC |
| SRR3110557 | shoot | shoot treated | 5.32 | MC |
| SRR5940086 | panicle | Wild type | 0.78 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.73 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 2.32 | MC |
| SRR8258051 | leaf_sheath | R_bph | 1.90 | MC |