| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 2.69 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 2.79 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 0.30 | MC |
| SRR8258050 | leaf_sheath | R_bph | 2.33 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 0.68 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 2.72 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 2.10 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 2.73 | MC |
| SRR10690152 | leaf | IRBB5_0h | 2.38 | MC |
| SRR7058097 | leaf | rice_mock | 1.41 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 0.61 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.28 | MC |
| SRR7058098 | leaf | rice_RSV | 0.84 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 4.32 | MC |
| SRR2154074 | seed | Nipponbare_seed | 0.42 | MC |
| SRR10690151 | leaf | IRBB5_0h | 2.25 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3.77 | MC |
| SRR1061624 | panicle | Normal | 0.24 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.50 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 0.57 | MC |
| SRR1061620 | flag_leaf | Normal | 0.53 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.77 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3.03 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.91 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.20 | MC |
| SRR9070101 | shoot_base | WT_base | 0.17 | MC |
| SRR089619 | panicle | control | 0.78 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.92 | MC |
| SRR1849765 | leaf | Control 30min | 2.25 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.88 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 1.67 | MC |
| SRR6498701 | leaf | "WT, Control" | 2.72 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 2.08 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 1.51 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 1.19 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 0.70 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 0.85 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 0.51 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.60 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.47 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 0.67 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 0.70 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 0.40 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 0.30 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 0.65 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 0.82 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.96 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.64 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.38 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 0.76 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1.59 | MC |
| SRR1849771 | leaf | Control 120min | 0.98 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1.59 | MC |
| SRR7058096 | leaf | rice_mock | 1.26 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 0.64 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.52 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.91 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.16 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 0.89 | MC |
| SRR10704060 | leaf | Glyphosate | 0.69 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 0.70 | MC |
| SRR4098208 | root | No treatment | 0.36 | MC |
| SRR4098209 | leaf | No treatment | 0.72 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.34 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.86 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.60 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.73 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 2.16 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.35 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.98 | MC |
| SRR8649147 | panicle | panicle tissue | 0.24 | MC |
| SRR10704055 | leaf | CK | 0.40 | MC |
| SRR10704057 | leaf | CK | 0.73 | MC |
| SRR10704056 | leaf | CK | 0.40 | MC |
| SRR10704059 | leaf | Glyphosate | 0.54 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 0.70 | MC |
| SRR9070102 | shoot_base | WT_base | 0.16 | MC |
| SRR6498699 | leaf | "WT, Control" | 0.98 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.70 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 2.53 | MC |
| SRR10690144 | leaf | IR24_0h | 2.33 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4.38 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 2.75 | MC |
| SRR10690143 | leaf | IR24_0h | 1.78 | MC |
| SRR10690142 | leaf | IR24_0h | 1.66 | MC |
| SRR2646852 | panicle | FP | 1.95 | MC |
| SRR2646853 | panicle | FP | 2.65 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.98 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.06 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3.09 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3.76 | MC |
| SRR2646854 | panicle | SP | 4.95 | MC |
| SRR2646855 | panicle | SP | 1.67 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 0.40 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 0.52 | MC |
| SRR6810101 | seedling | seedling | 0.87 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 2.53 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1.19 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 2.64 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 2.52 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.35 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2.12 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.04 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.59 | MC |
| SRR10690153 | leaf | IRBB5_0h | 2.13 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.91 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1.41 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.65 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.98 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 0.43 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.19 | MC |
| SRR3110556 | shoot | shoot control | 1.66 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 0.95 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.63 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 0.49 | MC |
| SRR1061616 | panicle | Normal | 0.16 | MC |
| SRR1061617 | panicle | Heat Stress | 0.32 | MC |
| SRR1061612 | panicle | Normal | 0.20 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.20 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 0.36 | MC |
| SRR1061618 | flag_leaf | Normal | 0.33 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 0.41 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.93 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 0.60 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 2.86 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1.88 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1.82 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 1.66 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.81 | MC |
| SRR089621 | panicle | cold | 0.80 | MC |
| SRR089620 | panicle | drought | 0.48 | MC |
| SRR089622 | panicle | salt | 0.54 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.89 | MC |
| SRR2544786 | embryo | dry seed | 0.86 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.80 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 2.68 | MC |
| SRR10956502 | panicle | WT | 0.40 | MC |
| SRR10956501 | panicle | WT | 0.74 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 2.60 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 1.24 | MC |
| SRR8258048 | leaf_sheath | R_bph | 5.63 | MC |
| SRR1740023 | seedling | IR64-Control | 0.55 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 0.49 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 0.43 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.08 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.42 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 2.79 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.30 | MC |
| SRR3110557 | shoot | shoot treated | 0.76 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.85 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.28 | MC |
| SRR8258051 | leaf_sheath | R_bph | 4.30 | MC |