Browse: Expression Capacity

miRNAs Expression Capacity

total numbers: 1259

RiceNCexp estimates the expression capacities of lncRNAs PHAS genes, microRNAs and phasiRNAs based on their expression levels in rice (Oryza sativa). For a certain context, high capacity non-coding RNAs (HCR) are expressed at high expression levels in at least one sample (HEP > 0.0%), and Low capacity non-coding RNAs (LCR) are expressed at low expression levels in all samples (HEP = 0.0% and MEP = 0.0%). The remaining lncRNAs are medium-capacity ncRNAs (MCR) (HEP = 0.0% and MEP > 0.0%)

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

HCR: High-Capacity ncRNA; MCR: Medium-Capacity ncRNA; LCR: Low-Capacity ncRNA

rows per page

Name	NE_num	NEP	LE_num	LEP	ME_num	MEP	HE_num	HEP	Expression Capacity
Osa-miR1864_Both	74	27.01%	41	14.96%	149	54.38%	10	3.65%	HCR
Osa-miR1865_PmiREN	27	9.85%	62	22.63%	179	65.33%	6	2.19%	HCR
Osa-miR1866_Both	206	75.18%	40	14.6%	20	7.3%	8	2.92%	HCR
Osa-miR1869_PmiREN	234	85.4%	38	13.87%	2	0.73%	0	0.0%	MCR
Osa-miR1870_Both	6	2.19%	8	2.92%	214	78.1%	46	16.79%	HCR
Osa-miR1871_Both	4	1.46%	4	1.46%	111	40.51%	155	56.57%	HCR
Osa-miR1874_Both	42	15.33%	46	16.79%	140	51.09%	46	16.79%	HCR
Osa-miR1875_Both	49	17.88%	49	17.88%	170	62.04%	6	2.19%	HCR
Osa-miR1876_Both	4	1.46%	3	1.09%	81	29.56%	186	67.88%	HCR
Osa-miR1877_Both	229	83.58%	11	4.01%	22	8.03%	12	4.38%	HCR
Osa-miR1878_PmiREN	22	8.03%	50	18.25%	162	59.12%	40	14.6%	HCR
Osa-miR1882a_Both	179	65.33%	16	5.84%	52	18.98%	27	9.85%	HCR
Osa-miR1882b_Both	179	65.33%	16	5.84%	52	18.98%	27	9.85%	HCR
Osa-miR1882c_Both	178	64.96%	17	6.2%	52	18.98%	27	9.85%	HCR
Osa-miR1882d_Both	178	64.96%	17	6.2%	52	18.98%	27	9.85%	HCR
Osa-miR1882e_Both	160	58.39%	27	9.85%	26	9.49%	61	22.26%	HCR
Osa-miR1882f_Both	178	64.96%	17	6.2%	52	18.98%	27	9.85%	HCR
Osa-miR1882g_Both	179	65.33%	16	5.84%	52	18.98%	27	9.85%	HCR
Osa-miR1882h_Both	179	65.33%	16	5.84%	52	18.98%	27	9.85%	HCR
Osa-miR1883_PmiREN	10	3.65%	13	4.74%	139	50.73%	112	40.88%	HCR
Osa-miR2090_PmiREN	130	47.45%	5	1.82%	124	45.26%	15	5.47%	HCR
Osa-miR2106_PmiREN	72	26.28%	82	29.93%	113	41.24%	7	2.55%	HCR
Osa-miR2118a_Both	173	63.14%	36	13.14%	53	19.34%	12	4.38%	HCR
Osa-miR2118b_Both	61	22.26%	50	18.25%	93	33.94%	70	25.55%	HCR
Osa-miR2118c_Both	98	35.77%	62	22.63%	67	24.45%	47	17.15%	HCR
Osa-miR2118d_Both	183	66.79%	19	6.93%	26	9.49%	46	16.79%	HCR
Osa-miR2118e_Both	49	17.88%	55	20.07%	120	43.8%	50	18.25%	HCR
Osa-miR2118f_Both	58	21.17%	74	27.01%	92	33.58%	50	18.25%	HCR
Osa-miR2118g_Both	75	27.37%	81	29.56%	75	27.37%	43	15.69%	HCR
Osa-miR2118h_Both	144	52.55%	55	20.07%	34	12.41%	41	14.96%	HCR
Osa-miR2118i_PmiREN	49	17.88%	55	20.07%	120	43.8%	50	18.25%	HCR
Osa-miR2118j_Both	56	20.44%	71	25.91%	97	35.4%	50	18.25%	HCR
Osa-miR2118k_Both	144	52.55%	55	20.07%	34	12.41%	41	14.96%	HCR
Osa-miR2118l_PmiREN	87	31.75%	66	24.09%	74	27.01%	47	17.15%	HCR
Osa-miR2118m_Both	90	32.85%	73	26.64%	61	22.26%	50	18.25%	HCR
Osa-miR2118n_Both	61	22.26%	50	18.25%	93	33.94%	70	25.55%	HCR
Osa-miR2118o_Both	86	31.39%	58	21.17%	80	29.2%	50	18.25%	HCR
Osa-miR2118p_Both	182	66.42%	31	11.31%	20	7.3%	41	14.96%	HCR
Osa-miR2275a_PmiREN	234	85.4%	11	4.01%	25	9.12%	4	1.46%	HCR
Osa-miR2275b_PmiREN	234	85.4%	11	4.01%	25	9.12%	4	1.46%	HCR
Osa-miR2275c_PmiREN	130	47.45%	63	22.99%	41	14.96%	40	14.6%	HCR
Osa-miR2275d_PmiREN	130	47.45%	63	22.99%	41	14.96%	40	14.6%	HCR
Osa-miR2275e_PmiREN	235	85.77%	13	4.74%	26	9.49%	0	0.0%	MCR
Osa-miR2275f_PmiREN	219	79.93%	20	7.3%	26	9.49%	9	3.28%	HCR
Osa-miR2275g_PmiREN	189	68.98%	39	14.23%	31	11.31%	15	5.47%	HCR
Osa-miR2275h_PmiREN	189	68.98%	39	14.23%	31	11.31%	15	5.47%	HCR
Osa-miR2275i_PmiREN	135	49.27%	40	14.6%	48	17.52%	51	18.61%	HCR
Osa-miR2275j_PmiREN	135	49.27%	43	15.69%	45	16.42%	51	18.61%	HCR
Osa-miR2863a_PmiREN	19	6.93%	26	9.49%	206	75.18%	23	8.39%	HCR
Osa-miR2863b_Both	9	3.28%	24	8.76%	237	86.5%	4	1.46%	HCR
Osa-miR2865_Both	116	42.34%	40	14.6%	118	43.07%	0	0.0%	MCR
Osa-miR2867_Both	80	29.2%	71	25.91%	114	41.61%	9	3.28%	HCR
Osa-miR2871_PmiREN	4	1.46%	4	1.46%	153	55.84%	113	41.24%	HCR
Osa-miR2873a_Both	43	15.69%	34	12.41%	121	44.16%	76	27.74%	HCR
Osa-miR2873b_Both	23	8.39%	32	11.68%	208	75.91%	11	4.01%	HCR
Osa-miR2873c_PmiREN	146	53.28%	112	40.88%	16	5.84%	0	0.0%	MCR
Osa-miR2873d_PmiREN	23	8.39%	32	11.68%	208	75.91%	11	4.01%	HCR
Osa-miR2873e_PmiREN	23	8.39%	32	11.68%	208	75.91%	11	4.01%	HCR
Osa-miR2873f_PmiREN	84	30.66%	99	36.13%	91	33.21%	0	0.0%	MCR
Osa-miR2876_PmiREN	65	23.72%	17	6.2%	139	50.73%	53	19.34%	HCR
Osa-miR2877_Both	83	30.29%	27	9.85%	108	39.42%	56	20.44%	HCR
Osa-miR2878_Both	4	1.46%	6	2.19%	171	62.41%	93	33.94%	HCR
Osa-miR2880_Both	24	8.76%	38	13.87%	186	67.88%	26	9.49%	HCR
Osa-miR2905_PmiREN	90	32.85%	95	34.67%	89	32.48%	0	0.0%	MCR
Osa-miR319a_PmiREN	9	3.28%	12	4.38%	108	39.42%	145	52.92%	HCR
Osa-miR319b_PmiREN	7	2.55%	6	2.19%	103	37.59%	158	57.66%	HCR
Osa-miR390_Both	0	0.0%	0	0.0%	85	31.02%	189	68.98%	HCR
Osa-miR393a_Both	6	2.19%	2	0.73%	85	31.02%	181	66.06%	HCR
Osa-miR393b_PmiREN	5	1.82%	3	1.09%	77	28.1%	189	68.98%	HCR
Osa-miR394_Both	4	1.46%	3	1.09%	69	25.18%	198	72.26%	HCR
Osa-miR395a_PmiREN	134	48.91%	74	27.01%	66	24.09%	0	0.0%	MCR
Osa-miR395b_PmiREN	14	5.11%	22	8.03%	196	71.53%	42	15.33%	HCR
Osa-miR395c_PmiREN	190	69.34%	68	24.82%	16	5.84%	0	0.0%	MCR
Osa-miR395d_Both	12	4.38%	21	7.66%	197	71.9%	44	16.06%	HCR
Osa-miR395e_PmiREN	12	4.38%	20	7.3%	198	72.26%	44	16.06%	HCR
Osa-miR395f_PmiREN	10	3.65%	19	6.93%	199	72.63%	46	16.79%	HCR
Osa-miR395g_PmiREN	10	3.65%	17	6.2%	201	73.36%	46	16.79%	HCR
Osa-miR395h_PmiREN	14	5.11%	25	9.12%	194	70.8%	41	14.96%	HCR
Osa-miR395i_Both	13	4.74%	22	8.03%	194	70.8%	45	16.42%	HCR
Osa-miR395j_PmiREN	13	4.74%	26	9.49%	191	69.71%	44	16.06%	HCR
Osa-miR395k_Both	13	4.74%	22	8.03%	194	70.8%	45	16.42%	HCR
Osa-miR395l_PmiREN	11	4.01%	22	8.03%	195	71.17%	46	16.79%	HCR
Osa-miR395m_PmiREN	18	6.57%	29	10.58%	192	70.07%	35	12.77%	HCR
Osa-miR395n_Both	8	2.92%	21	7.66%	199	72.63%	46	16.79%	HCR
Osa-miR395o_PmiREN	214	78.1%	54	19.71%	6	2.19%	0	0.0%	MCR
Osa-miR395p_Both	12	4.38%	20	7.3%	196	71.53%	46	16.79%	HCR
Osa-miR395q_PmiREN	13	4.74%	24	8.76%	192	70.07%	45	16.42%	HCR
Osa-miR395r_PmiREN	17	6.2%	28	10.22%	192	70.07%	37	13.5%	HCR
Osa-miR395s_Both	10	3.65%	19	6.93%	199	72.63%	46	16.79%	HCR
Osa-miR395t_PmiREN	270	98.54%	4	1.46%	0	0.0%	0	0.0%	LCR
Osa-miR396a_Both	0	0.0%	2	0.73%	101	36.86%	171	62.41%	HCR
Osa-miR396b_Both	0	0.0%	2	0.73%	101	36.86%	171	62.41%	HCR
Osa-miR396c_Both	0	0.0%	3	1.09%	26	9.49%	245	89.42%	HCR
Osa-miR396d_Both	3	1.09%	9	3.28%	103	37.59%	159	58.03%	HCR
Osa-miR396e_Both	0	0.0%	0	0.0%	1	0.36%	273	99.64%	HCR
Osa-miR396f_PmiREN	0	0.0%	0	0.0%	1	0.36%	273	99.64%	HCR
Osa-miR396g_Both	3	1.09%	10	3.65%	102	37.23%	159	58.03%	HCR
Osa-miR3979_PmiREN	52	18.98%	71	25.91%	124	45.26%	27	9.85%	HCR
Osa-miR397a_PmiREN	2	0.73%	2	0.73%	89	32.48%	181	66.06%	HCR
Osa-miR397b_PmiREN	2	0.73%	0	0.0%	48	17.52%	224	81.75%	HCR
Osa-miR3980a_PmiREN	268	97.81%	6	2.19%	0	0.0%	0	0.0%	LCR
Osa-miR3980b_PmiREN	268	97.81%	6	2.19%	0	0.0%	0	0.0%	LCR
Osa-miR3982_PmiREN	14	5.11%	35	12.77%	203	74.09%	22	8.03%	HCR
Osa-miR398_PmiREN	19	6.93%	22	8.03%	110	40.15%	123	44.89%	HCR
Osa-miR399a_Both	77	28.1%	48	17.52%	144	52.55%	5	1.82%	HCR
Osa-miR399b_Both	77	28.1%	47	17.15%	145	52.92%	5	1.82%	HCR
Osa-miR399c_Both	77	28.1%	48	17.52%	144	52.55%	5	1.82%	HCR
Osa-miR399d_PmiREN	128	46.72%	43	15.69%	77	28.1%	26	9.49%	HCR
Osa-miR399e_Both	179	65.33%	63	22.99%	32	11.68%	0	0.0%	MCR
Osa-miR399f_Both	179	65.33%	63	22.99%	32	11.68%	0	0.0%	MCR
Osa-miR399g_Both	181	66.06%	61	22.26%	32	11.68%	0	0.0%	MCR
Osa-miR399h_Both	216	78.83%	46	16.79%	12	4.38%	0	0.0%	MCR
Osa-miR399i_Both	156	56.93%	45	16.42%	73	26.64%	0	0.0%	MCR
Osa-miR399j_PmiREN	30	10.95%	25	9.12%	133	48.54%	86	31.39%	HCR
Osa-miR399k_Both	129	47.08%	65	23.72%	78	28.47%	2	0.73%	HCR
Osa-miR399l_PmiREN	77	28.1%	47	17.15%	145	52.92%	5	1.82%	HCR
Osa-miR408_Both	2	0.73%	2	0.73%	107	39.05%	163	59.49%	HCR
Osa-miR418_PmiREN	272	99.27%	2	0.73%	0	0.0%	0	0.0%	LCR
Osa-miR439a_PmiREN	36	13.14%	52	18.98%	179	65.33%	7	2.55%	HCR
Osa-miR439b_PmiREN	60	21.9%	77	28.1%	137	50.0%	0	0.0%	MCR
Osa-miR439c_PmiREN	40	14.6%	47	17.15%	187	68.25%	0	0.0%	MCR
Osa-miR439d_PmiREN	36	13.14%	52	18.98%	179	65.33%	7	2.55%	HCR
Osa-miR439e_Both	170	62.04%	78	28.47%	26	9.49%	0	0.0%	MCR
Osa-miR439f_PmiREN	36	13.14%	52	18.98%	179	65.33%	7	2.55%	HCR
Osa-miR439g_PmiREN	36	13.14%	52	18.98%	179	65.33%	7	2.55%	HCR
Osa-miR440_Both	66	24.09%	81	29.56%	125	45.62%	2	0.73%	HCR
Osa-miR444a_Both	1	0.36%	0	0.0%	45	16.42%	228	83.21%	HCR
Osa-miR444b_PmiREN	0	0.0%	0	0.0%	5	1.82%	269	98.18%	HCR
Osa-miR444c_PmiREN	2	0.73%	0	0.0%	13	4.74%	259	94.53%	HCR
Osa-miR444d_PmiREN	1	0.36%	0	0.0%	47	17.15%	226	82.48%	HCR
Osa-miR444e_Both	1	0.36%	0	0.0%	48	17.52%	225	82.12%	HCR
Osa-miR482_PmiREN	177	64.6%	28	10.22%	27	9.85%	42	15.33%	HCR
Osa-miR5143_PmiREN	8	2.92%	10	3.65%	244	89.05%	12	4.38%	HCR
Osa-miR5148a_Both	50	18.25%	72	26.28%	150	54.74%	2	0.73%	HCR
Osa-miR5148b_Both	46	16.79%	67	24.45%	159	58.03%	2	0.73%	HCR
Osa-miR5148c_Both	46	16.79%	67	24.45%	159	58.03%	2	0.73%	HCR
Osa-miR5150_Both	2	0.73%	4	1.46%	195	71.17%	73	26.64%	HCR
Osa-miR5151_PmiREN	65	23.72%	69	25.18%	131	47.81%	9	3.28%	HCR
Osa-miR5152a_PmiREN	190	69.34%	66	24.09%	18	6.57%	0	0.0%	MCR
Osa-miR5152b_PmiREN	237	86.5%	32	11.68%	5	1.82%	0	0.0%	MCR
Osa-miR5159_Both	72	26.28%	22	8.03%	163	59.49%	17	6.2%	HCR
Osa-miR5160_PmiREN	5	1.82%	17	6.2%	225	82.12%	27	9.85%	HCR
Osa-miR5161_Both	124	45.26%	89	32.48%	61	22.26%	0	0.0%	MCR
Osa-miR5179_Both	218	79.56%	22	8.03%	33	12.04%	1	0.36%	HCR
Osa-miR528_Both	7	2.55%	1	0.36%	72	26.28%	194	70.8%	HCR
Osa-miR529a_PmiREN	7	2.55%	4	1.46%	91	33.21%	172	62.77%	HCR
Osa-miR529b_Both	23	8.39%	33	12.04%	160	58.39%	58	21.17%	HCR
Osa-miR530_PmiREN	83	30.29%	29	10.58%	70	25.55%	92	33.58%	HCR
Osa-miR531a_PmiREN	114	41.61%	12	4.38%	119	43.43%	29	10.58%	HCR
Osa-miR531b_PmiREN	114	41.61%	12	4.38%	119	43.43%	29	10.58%	HCR
Osa-miR531c_PmiREN	114	41.61%	12	4.38%	119	43.43%	29	10.58%	HCR
Osa-miR531d_PmiREN	114	41.61%	12	4.38%	119	43.43%	29	10.58%	HCR
Osa-miR531e_PmiREN	114	41.61%	12	4.38%	119	43.43%	29	10.58%	HCR
Osa-miR5337a_Both	98	35.77%	85	31.02%	85	31.02%	6	2.19%	HCR
Osa-miR5337b_PmiREN	184	67.15%	64	23.36%	26	9.49%	0	0.0%	MCR
Osa-miR535_Both	0	0.0%	1	0.36%	51	18.61%	222	81.02%	HCR
Osa-miR5485_PmiREN	134	48.91%	80	29.2%	52	18.98%	8	2.92%	HCR
Osa-miR5486_Both	191	69.71%	17	6.2%	55	20.07%	11	4.01%	HCR
Osa-miR5487_Both	206	75.18%	14	5.11%	51	18.61%	3	1.09%	HCR
Osa-miR5488_Both	208	75.91%	17	6.2%	48	17.52%	1	0.36%	HCR
Osa-miR5489_Both	234	85.4%	3	1.09%	23	8.39%	14	5.11%	HCR
Osa-miR5490_Both	182	66.42%	28	10.22%	45	16.42%	19	6.93%	HCR
Osa-miR5491_Both	216	78.83%	7	2.55%	50	18.25%	1	0.36%	HCR
Osa-miR5492_Both	235	85.77%	19	6.93%	20	7.3%	0	0.0%	MCR
Osa-miR5494_Both	227	82.85%	9	3.28%	30	10.95%	8	2.92%	HCR
Osa-miR5495_Both	238	86.86%	3	1.09%	32	11.68%	1	0.36%	HCR
Osa-miR5496_Both	212	77.37%	4	1.46%	31	11.31%	27	9.85%	HCR
Osa-miR5497_Both	196	71.53%	6	2.19%	32	11.68%	40	14.6%	HCR
Osa-miR5499_Both	218	79.56%	16	5.84%	40	14.6%	0	0.0%	MCR
Osa-miR5503_Both	97	35.4%	93	33.94%	84	30.66%	0	0.0%	MCR
Osa-miR5504_PmiREN	42	15.33%	92	33.58%	138	50.36%	2	0.73%	HCR
Osa-miR5505_Both	107	39.05%	87	31.75%	80	29.2%	0	0.0%	MCR
Osa-miR5508_Both	26	9.49%	35	12.77%	207	75.55%	6	2.19%	HCR
Osa-miR5512_PmiREN	37	13.5%	69	25.18%	160	58.39%	8	2.92%	HCR
Osa-miR5513_Both	8	2.92%	8	2.92%	256	93.43%	2	0.73%	HCR
Osa-miR5516a_Both	210	76.64%	8	2.92%	18	6.57%	38	13.87%	HCR
Osa-miR5516b_Both	211	77.01%	7	2.55%	18	6.57%	38	13.87%	HCR
Osa-miR5517_Both	235	85.77%	24	8.76%	15	5.47%	0	0.0%	MCR
Osa-miR5519_Both	194	70.8%	5	1.82%	44	16.06%	31	11.31%	HCR
Osa-miR5527_Both	200	72.99%	17	6.2%	39	14.23%	18	6.57%	HCR
Osa-miR5536_PmiREN	94	34.31%	113	41.24%	67	24.45%	0	0.0%	MCR
Osa-miR5537a_PmiREN	183	66.79%	63	22.99%	28	10.22%	0	0.0%	MCR
Osa-miR5537b_PmiREN	183	66.79%	63	22.99%	28	10.22%	0	0.0%	MCR
Osa-miR5537c_PmiREN	190	69.34%	65	23.72%	19	6.93%	0	0.0%	MCR
Osa-miR5541_Both	223	81.39%	43	15.69%	8	2.92%	0	0.0%	MCR
Osa-miR5542_Both	133	48.54%	49	17.88%	88	32.12%	4	1.46%	HCR
Osa-miR5788a_PmiREN	24	8.76%	30	10.95%	164	59.85%	56	20.44%	HCR
Osa-miR5788b_PmiREN	103	37.59%	34	12.41%	137	50.0%	0	0.0%	MCR
Osa-miR5788c_PmiREN	79	28.83%	55	20.07%	140	51.09%	0	0.0%	MCR
Osa-miR5788d_PmiREN	95	34.67%	42	15.33%	137	50.0%	0	0.0%	MCR
Osa-miR5788e_PmiREN	99	36.13%	33	12.04%	142	51.82%	0	0.0%	MCR
Osa-miR5788f_PmiREN	99	36.13%	33	12.04%	142	51.82%	0	0.0%	MCR
Osa-miR5789_Both	218	79.56%	20	7.3%	35	12.77%	1	0.36%	HCR
Osa-miR5795a_PmiREN	165	60.22%	29	10.58%	58	21.17%	22	8.03%	HCR
Osa-miR5795b_PmiREN	165	60.22%	29	10.58%	58	21.17%	22	8.03%	HCR
Osa-miR5795c_PmiREN	165	60.22%	29	10.58%	58	21.17%	22	8.03%	HCR
Osa-miR5795d_PmiREN	167	60.95%	27	9.85%	58	21.17%	22	8.03%	HCR
Osa-miR5799_PmiREN	27	9.85%	46	16.79%	199	72.63%	2	0.73%	HCR
Osa-miR5800_Both	197	71.9%	0	0.0%	49	17.88%	28	10.22%	HCR
Osa-miR5801a_Both	68	24.82%	61	22.26%	145	52.92%	0	0.0%	MCR