| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 81.67 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 18.57 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 64.85 | HC |
| SRR9070101 | shoot_base | WT_base | 8.76 | HC |
| SRR089619 | panicle | control | 48.14 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 172.00 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 94.24 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 13.67 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 9.25 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 8.84 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 22.89 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 14.04 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 10.65 | HC |
| SRR4098208 | root | No treatment | 18.01 | HC |
| SRR4098209 | leaf | No treatment | 13.65 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 7.54 | HC |
| SRR9070100 | shoot_base | WT_base | 10.78 | HC |
| SRR4098205 | seedling | Heat (50C) | 27.27 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 15.27 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 12.00 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 37.13 | HC |
| SRR8649147 | panicle | panicle tissue | 5.99 | HC |
| SRR9070102 | shoot_base | WT_base | 7.61 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 8.17 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 42.09 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 115.00 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.08 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 13.75 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 9.05 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.99 | HC |
| SRR089621 | panicle | cold | 55.19 | HC |
| SRR089620 | panicle | drought | 34.99 | HC |
| SRR089622 | panicle | salt | 45.02 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 9.78 | HC |
| SRR2544786 | embryo | dry seed | 6.66 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 16.84 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 11.68 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 17.10 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 13.38 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 50.40 | HC |