| SRR8258050 | leaf_sheath | R_bph | 85.22 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 27.60 | HC |
| SRR7058097 | leaf | rice_mock | 298.94 | HC |
| SRR7058098 | leaf | rice_RSV | 399.35 | HC |
| SRR2154074 | seed | Nipponbare_seed | 16.17 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 6.89 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 29.16 | HC |
| SRR9070101 | shoot_base | WT_base | 20.05 | HC |
| SRR089619 | panicle | control | 19.40 | HC |
| SRR447135 | shoot | As(III) 20 uM | 30.44 | HC |
| SRR447134 | shoot | As(III) 80 uM | 40.49 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 33.41 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 48.09 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 77.09 | HC |
| SRR6498701 | leaf | "WT, Control" | 68.19 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 67.02 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 65.54 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 28.74 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 23.50 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 16.30 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 15.63 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 19.84 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 47.16 | HC |
| SRR1849772 | leaf | Control 120min | 35.40 | HC |
| SRR7058096 | leaf | rice_mock | 573.03 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 10.88 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 23.06 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 27.02 | HC |
| SRR447136 | shoot | As(III) 80 uM | 44.33 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 23.86 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 22.91 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 24.80 | HC |
| SRR2154075 | seed | Taipei309_seed | 13.25 | HC |
| SRR976171 | lamina_joint | wild type | 78.23 | HC |
| SRR4098209 | leaf | No treatment | 99.46 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 22.66 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 16.82 | HC |
| SRR9070100 | shoot_base | WT_base | 22.63 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 24.68 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 21.36 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 22.45 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 24.89 | HC |
| SRR2862364 | leaf | mock leaf cells | 22.14 | HC |
| SRR2862365 | leaf | mock leaf cells | 38.85 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 113.01 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 16.97 | HC |
| SRR2862363 | leaf | mock leaf cells | 109.07 | HC |
| SRR8649147 | panicle | panicle tissue | 12.44 | HC |
| SRR4098207 | panicle | No treatment | 6.59 | HC |
| SRR10704059 | leaf | Glyphosate | 25.61 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 22.25 | HC |
| SRR9070102 | shoot_base | WT_base | 20.32 | HC |
| SRR6498699 | leaf | "WT, Control" | 70.54 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 17.35 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 19.02 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 21.21 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 7.24 | HC |
| SRR4098203 | seedling | No treatment | 16.17 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 85.98 | HC |
| SRR6810101 | seedling | seedling | 39.05 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 80.97 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 25.32 | HC |
| SRR3110556 | shoot | shoot control | 149.44 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 19.49 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 14.97 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 16.42 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 26.56 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 15.53 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 22.21 | HC |
| SRR089621 | panicle | cold | 25.09 | HC |
| SRR089620 | panicle | drought | 18.27 | HC |
| SRR089622 | panicle | salt | 20.54 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 15.32 | HC |
| SRR2544786 | embryo | dry seed | 8.99 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 21.93 | HC |
| SRR6810102 | seedling | seedling | 38.69 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 65.37 | HC |
| SRR10956501 | panicle | WT | 8.38 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 62.79 | HC |
| SRR8258048 | leaf_sheath | R_bph | 88.03 | HC |
| SRR1740023 | seedling | IR64-Control | 28.66 | HC |
| SRR1740024 | seedling | N22-Control | 45.27 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 28.84 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 32.48 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 20.47 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 15.67 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 64.41 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 8.96 | HC |
| SRR1654490 | leaf | wild type | 20.36 | HC |
| SRR3110557 | shoot | shoot treated | 139.57 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 4.93 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 9.18 | HC |
| SRR8258051 | leaf_sheath | R_bph | 102.15 | HC |