| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 1.49 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 1.64 | MC |
| SRR8258050 | leaf_sheath | R_bph | 1.91 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 5.18 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 1.97 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 2.73 | MC |
| SRR10690152 | leaf | IRBB5_0h | 9.60 | MC |
| SRR7058097 | leaf | rice_mock | 3.99 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 1.87 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 1.09 | MC |
| SRR7058098 | leaf | rice_RSV | 3.93 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1.85 | MC |
| SRR2154074 | seed | Nipponbare_seed | 3.93 | MC |
| SRR10690151 | leaf | IRBB5_0h | 9.20 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 4.32 | MC |
| SRR2154070 | seed | Guangluai4_seed | 0.24 | MC |
| SRR2154071 | seed | KDM105_seed | 0.31 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.43 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 0.72 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.61 | MC |
| SRR1061622 | flag_leaf | Normal | 1.23 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 2.08 | MC |
| SRR1061620 | flag_leaf | Normal | 1.82 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.44 | MC |
| SRR10704058 | leaf | Glyphosate | 1.03 | MC |
| SRR447128 | root | As(III) 20 uM | 0.68 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3.28 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.45 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.52 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 1.58 | MC |
| SRR1013787 | panicle | PA64s_PA | 4.55 | MC |
| SRR504363 | leaf | 93-11 X NPB | 4.05 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 2.48 | MC |
| SRR1013788 | panicle | LYP9_PA | 1.57 | MC |
| SRR9070101 | shoot_base | WT_base | 0.91 | MC |
| SRR089619 | panicle | control | 4.81 | MC |
| SRR447134 | shoot | As(III) 80 uM | 0.80 | MC |
| SRR447131 | root | As(III) 80 uM | 0.50 | MC |
| SRR447130 | root | As(III) 20 uM | 0.52 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.64 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 2.02 | MC |
| SRR6498701 | leaf | "WT, Control" | 1.16 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.48 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 8.93 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 0.54 | MC |
| SRR3203907 | leaf | WT | 0.31 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2.51 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 3.83 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 5.05 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1.13 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 3.79 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.29 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 2.29 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 0.65 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1.20 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 2.49 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 1.49 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 3.98 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.69 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.51 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.60 | MC |
| SRR447129 | root | As(III) 80 uM | 0.24 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 1.89 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1.59 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 1.77 | MC |
| SRR3130370 | leaf | control 8 hour | 0.90 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 1.45 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 0.43 | MC |
| SRR7058096 | leaf | rice_mock | 3.20 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.31 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 0.19 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.78 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.45 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.57 | MC |
| SRR10704060 | leaf | Glyphosate | 0.69 | MC |
| SRR2154075 | seed | Taipei309_seed | 1.94 | MC |
| SRR976171 | lamina_joint | wild type | 5.40 | MC |
| SRR4098208 | root | No treatment | 1.89 | MC |
| SRR089774 | panicle | wild-type | 1.48 | MC |
| SRR089772 | panicle | wild-type | 1.62 | MC |
| SRR4098209 | leaf | No treatment | 1.61 | MC |
| SRR3130369 | leaf | control 8 hour | 0.81 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 0.58 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.48 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.64 | MC |
| SRR9070100 | shoot_base | WT_base | 0.77 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.60 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.12 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.89 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.27 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.81 | MC |
| SRR3130365 | leaf | control 0 hour | 1.26 | MC |
| SRR3130366 | leaf | control 0 hour | 1.38 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.30 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.28 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.24 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.14 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.12 | MC |
| SRR2862364 | leaf | mock leaf cells | 0.97 | MC |
| SRR2862365 | leaf | mock leaf cells | 0.49 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 1.98 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 1.28 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 1.55 | MC |
| SRR2862363 | leaf | mock leaf cells | 1.40 | MC |
| SRR8649147 | panicle | panicle tissue | 0.32 | MC |
| SRR4098207 | panicle | No treatment | 2.24 | MC |
| SRR10704055 | leaf | CK | 1.20 | MC |
| SRR10704057 | leaf | CK | 2.13 | MC |
| SRR10704056 | leaf | CK | 0.88 | MC |
| SRR10704059 | leaf | Glyphosate | 0.90 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 2.52 | MC |
| SRR9070102 | shoot_base | WT_base | 0.51 | MC |
| SRR6498699 | leaf | "WT, Control" | 0.70 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.70 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1.47 | MC |
| SRR10690144 | leaf | IR24_0h | 1.20 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 2.17 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1.68 | MC |
| SRR10690143 | leaf | IR24_0h | 6.09 | MC |
| SRR10690142 | leaf | IR24_0h | 1.42 | MC |
| SRR2646852 | panicle | FP | 0.28 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.74 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.66 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1.82 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1.56 | MC |
| SRR2646854 | panicle | SP | 0.28 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 0.58 | MC |
| SRR4098203 | seedling | No treatment | 1.10 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 0.28 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 0.15 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1.19 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1.60 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.44 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 1.10 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 1.17 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.26 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 1.22 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.89 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 0.98 | MC |
| SRR1849784 | root | Control 120min | 0.52 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 2.51 | MC |
| SRR10690153 | leaf | IRBB5_0h | 7.60 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 2.34 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 3.20 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 2.25 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2.80 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 2.29 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 1.32 | MC |
| SRR3110556 | shoot | shoot control | 8.62 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 4.96 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 5.32 | MC |
| SRR1061616 | panicle | Normal | 0.64 | MC |
| SRR1061617 | panicle | Heat Stress | 1.06 | MC |
| SRR1061614 | panicle | Normal | 0.47 | MC |
| SRR1061615 | panicle | Heat Stress | 1.23 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.36 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.60 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 3.53 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1.43 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1.40 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 0.90 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 3.24 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.40 | MC |
| SRR089621 | panicle | cold | 7.02 | MC |
| SRR089620 | panicle | drought | 7.19 | MC |
| SRR089622 | panicle | salt | 4.65 | MC |
| SRR504360 | leaf | Nipponbare | 10.78 | MC |
| SRR504361 | leaf | Nov-93 | 0.66 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 3.96 | MC |
| SRR2544786 | embryo | dry seed | 1.85 | MC |
| SRR4098172 | seedling | Cold (4C) | 1.44 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 0.99 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 1.71 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 2.10 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 2.99 | MC |
| SRR8258048 | leaf_sheath | R_bph | 1.52 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 0.48 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.49 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 1.22 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.40 | MC |
| SRR1654490 | leaf | wild type | 4.86 | MC |
| SRR3110557 | shoot | shoot treated | 8.99 | MC |
| SRR5940086 | panicle | Wild type | 0.39 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.87 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1.24 | MC |
| SRR8258051 | leaf_sheath | R_bph | 2.00 | MC |
| SRR504362 | leaf | NPB X 93-11 | 1.45 | MC |