| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 378.41 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 331.09 | HC |
| SRR8258050 | leaf_sheath | R_bph | 119.97 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 119.98 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 362.99 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 360.91 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 263.55 | HC |
| SRR10690152 | leaf | IRBB5_0h | 40.62 | HC |
| SRR6810106 | panicle | panicle | 6.90 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 97.29 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 172.27 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 31.77 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 54.72 | HC |
| SRR2154077 | seedling | KDM105_seedling | 64.38 | HC |
| SRR10690151 | leaf | IRBB5_0h | 37.66 | HC |
| SRR2154072 | seed | Rathuwee_seed | 9.64 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 16.07 | HC |
| SRR2154071 | seed | KDM105_seed | 5.34 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 15.02 | HC |
| SRR1061625 | panicle | Heat Stress | 8.87 | HC |
| SRR1061624 | panicle | Normal | 26.41 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 21.61 | HC |
| SRR10704058 | leaf | Glyphosate | 122.94 | HC |
| SRR447128 | root | As(III) 20 uM | 37.11 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 51.51 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 35.18 | HC |
| SRR1013787 | panicle | PA64s_PA | 40.11 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 60.08 | HC |
| SRR1013789 | panicle | 93-11_PA | 10.33 | HC |
| SRR1013788 | panicle | LYP9_PA | 16.36 | HC |
| SRR9070101 | shoot_base | WT_base | 5.95 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 102.31 | HC |
| SRR6810105 | panicle | panicle | 7.52 | HC |
| SRR089619 | panicle | control | 14.58 | HC |
| SRR447131 | root | As(III) 80 uM | 12.03 | HC |
| SRR447130 | root | As(III) 20 uM | 97.29 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 154.25 | HC |
| SRR6498701 | leaf | "WT, Control" | 119.72 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 190.37 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 971.86 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 50.73 | HC |
| SRR3203907 | leaf | WT | 49.42 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 123.28 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 64.71 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 54.03 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 155.99 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 450.58 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 76.38 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 173.70 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 170.17 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 161.39 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 71.69 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 116.87 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 803.52 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 32.95 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 41.77 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 56.37 | HC |
| SRR1849771 | leaf | Control 120min | 38.03 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 26.03 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 19.08 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 55.52 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 45.12 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 75.19 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 24.81 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 91.10 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 46.92 | HC |
| SRR10704060 | leaf | Glyphosate | 74.59 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 133.20 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 26.22 | HC |
| SRR2154075 | seed | Taipei309_seed | 12.13 | HC |
| SRR3140952 | leaf | "45C, 0h" | 10.29 | HC |
| SRR4098208 | root | No treatment | 66.36 | HC |
| SRR3130369 | leaf | control 8 hour | 16.67 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 17.16 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 18.54 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 40.06 | HC |
| SRR9070100 | shoot_base | WT_base | 4.42 | HC |
| SRR4098205 | seedling | Heat (50C) | 51.92 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 20.15 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 33.22 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 32.74 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 23.78 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 20.47 | HC |
| SRR3130366 | leaf | control 0 hour | 18.56 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 8.63 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 9.58 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 4.77 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 2.78 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 2.36 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 41.70 | HC |
| SRR8649147 | panicle | panicle tissue | 14.08 | HC |
| SRR10704055 | leaf | CK | 44.60 | HC |
| SRR10704057 | leaf | CK | 116.98 | HC |
| SRR10704056 | leaf | CK | 62.30 | HC |
| SRR10704059 | leaf | Glyphosate | 17.39 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 17.92 | HC |
| SRR9070102 | shoot_base | WT_base | 4.45 | HC |
| SRR6498699 | leaf | "WT, Control" | 85.62 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 93.76 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 81.40 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 37.87 | HC |
| SRR10690144 | leaf | IR24_0h | 34.59 | HC |
| SRR10690143 | leaf | IR24_0h | 41.57 | HC |
| SRR10690142 | leaf | IR24_0h | 42.17 | HC |
| SRR2646852 | panicle | FP | 110.27 | HC |
| SRR2646853 | panicle | FP | 92.83 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 16.43 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 28.37 | HC |
| SRR2646854 | panicle | SP | 74.12 | HC |
| SRR2646855 | panicle | SP | 78.36 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 30.77 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 40.37 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 39.92 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 41.71 | HC |
| SRR4098203 | seedling | No treatment | 132.44 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 28.94 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 29.88 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 32.39 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 23.09 | HC |
| SRR6365693 | panicle | Wild type | 11.22 | HC |
| SRR6365694 | panicle | Wild type | 10.13 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 40.26 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 97.22 | HC |
| SRR6810101 | seedling | seedling | 27.99 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 171.43 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 116.76 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 36.38 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 238.00 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 255.22 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 11.41 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 22.66 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 486.31 | HC |
| SRR10690153 | leaf | IRBB5_0h | 72.13 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 433.71 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 565.99 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 203.82 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 17.76 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 114.35 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 57.09 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 146.64 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 16.70 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 410.42 | HC |
| SRR1061616 | panicle | Normal | 6.95 | HC |
| SRR1061617 | panicle | Heat Stress | 16.32 | HC |
| SRR1061614 | panicle | Normal | 6.93 | HC |
| SRR1061615 | panicle | Heat Stress | 17.13 | HC |
| SRR1061612 | panicle | Normal | 12.79 | HC |
| SRR1061613 | panicle | Heat Stress | 14.12 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 112.76 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 41.07 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 161.94 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 83.66 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 81.44 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 24.49 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 96.24 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 86.14 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 110.65 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 884.46 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 29.97 | HC |
| SRR3140954 | leaf | "45C, 12h" | 16.64 | HC |
| SRR089621 | panicle | cold | 18.66 | HC |
| SRR089620 | panicle | drought | 22.02 | HC |
| SRR3140957 | leaf | "45C, 24h" | 45.08 | HC |
| SRR089622 | panicle | salt | 14.65 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 756.19 | HC |
| SRR2544786 | embryo | dry seed | 374.46 | HC |
| SRR4098172 | seedling | Cold (4C) | 38.92 | HC |
| SRR3140956 | leaf | "45C, 24h" | 58.42 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 33.99 | HC |
| SRR3140953 | leaf | "45C, 0h" | 15.38 | HC |
| SRR6810102 | seedling | seedling | 37.15 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 196.08 | HC |
| SRR10956502 | panicle | WT | 24.07 | HC |
| SRR10956501 | panicle | WT | 26.41 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 239.45 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 449.92 | HC |
| SRR8258048 | leaf_sheath | R_bph | 125.09 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 230.48 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 80.11 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 80.54 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 41.00 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 26.41 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 201.07 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 29.18 | HC |
| SRR1654490 | leaf | wild type | 18.51 | HC |
| SRR5940086 | panicle | Wild type | 25.52 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 326.45 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1184.86 | HC |
| SRR8258051 | leaf_sheath | R_bph | 107.97 | HC |