| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 155.18 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 225.38 | HC |
| SRR8258050 | leaf_sheath | R_bph | 230.29 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 75.90 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 219.95 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 154.60 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 190.26 | HC |
| SRR10690152 | leaf | IRBB5_0h | 30.40 | HC |
| SRR6810106 | panicle | panicle | 36.64 | HC |
| SRR7058097 | leaf | rice_mock | 326.59 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 18.09 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 7.71 | HC |
| SRR7058098 | leaf | rice_RSV | 178.20 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 199.12 | HC |
| SRR2154077 | seedling | KDM105_seedling | 222.56 | HC |
| SRR10690151 | leaf | IRBB5_0h | 25.77 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 43.27 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 21.77 | HC |
| SRR1061625 | panicle | Heat Stress | 179.55 | HC |
| SRR1061624 | panicle | Normal | 69.28 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 27.76 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 30.29 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 33.16 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 30.86 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 395.20 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 187.47 | HC |
| SRR1013787 | panicle | PA64s_PA | 136.27 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 192.28 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 53.74 | HC |
| SRR1013789 | panicle | 93-11_PA | 26.91 | HC |
| SRR1013788 | panicle | LYP9_PA | 43.47 | HC |
| SRR9070101 | shoot_base | WT_base | 22.75 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 217.56 | HC |
| SRR6810105 | panicle | panicle | 32.54 | HC |
| SRR089619 | panicle | control | 142.43 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 42.44 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 36.54 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 105.92 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 189.95 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 22.56 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 14.37 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 7.62 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 9.65 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 5.35 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 11.51 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 16.61 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 12.69 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 9.05 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 19.69 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 60.08 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 28.30 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 24.62 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 37.65 | HC |
| SRR7058096 | leaf | rice_mock | 200.95 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 3.21 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 6.80 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 253.84 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 222.68 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 39.05 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 51.32 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 19.70 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 96.45 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 87.37 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 88.61 | HC |
| SRR976171 | lamina_joint | wild type | 100.17 | HC |
| SRR4098208 | root | No treatment | 27.69 | HC |
| SRR4098209 | leaf | No treatment | 234.41 | HC |
| SRR3130369 | leaf | control 8 hour | 14.93 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 34.80 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 38.75 | HC |
| SRR9070100 | shoot_base | WT_base | 22.46 | HC |
| SRR4098205 | seedling | Heat (50C) | 95.25 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 30.65 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 23.61 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 24.62 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 33.94 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 31.84 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 4.06 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 3.75 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 4.68 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 2.85 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 6.55 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 7.27 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 132.06 | HC |
| SRR8649147 | panicle | panicle tissue | 116.11 | HC |
| SRR4098207 | panicle | No treatment | 299.50 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 23.82 | HC |
| SRR9070102 | shoot_base | WT_base | 18.98 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 112.40 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 205.54 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 20.90 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 30.36 | HC |
| SRR10690144 | leaf | IR24_0h | 37.67 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 33.18 | HC |
| SRR10690143 | leaf | IR24_0h | 52.97 | HC |
| SRR10690142 | leaf | IR24_0h | 50.97 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 59.54 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 18.30 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 25.05 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 215.42 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 13.03 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 38.40 | HC |
| SRR4098203 | seedling | No treatment | 53.60 | HC |
| SRR6365692 | panicle | Wild type | 90.96 | HC |
| SRR6365693 | panicle | Wild type | 46.40 | HC |
| SRR6365694 | panicle | Wild type | 47.63 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 37.94 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 238.66 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 39.63 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 109.31 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 130.20 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 42.33 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 189.25 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 197.86 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 8.63 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 41.11 | HC |
| SRR1849784 | root | Control 120min | 24.58 | HC |
| SRR6365691 | panicle | Wild type | 99.35 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 10.07 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 23.20 | HC |
| SRR3110556 | shoot | shoot control | 105.02 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 31.44 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 32.86 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 99.16 | HC |
| SRR1061616 | panicle | Normal | 64.61 | HC |
| SRR1061617 | panicle | Heat Stress | 99.75 | HC |
| SRR1061614 | panicle | Normal | 72.12 | HC |
| SRR1061615 | panicle | Heat Stress | 97.79 | HC |
| SRR1061612 | panicle | Normal | 347.59 | HC |
| SRR1061613 | panicle | Heat Stress | 156.03 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 30.04 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 21.26 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 158.93 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 2900.04 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 5137.13 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 21.82 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 26.08 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 90.49 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 90.34 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 97.73 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 34.86 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 20.60 | HC |
| SRR3140954 | leaf | "45C, 12h" | 23.51 | HC |
| SRR089621 | panicle | cold | 348.22 | HC |
| SRR089620 | panicle | drought | 244.49 | HC |
| SRR3140957 | leaf | "45C, 24h" | 57.39 | HC |
| SRR089622 | panicle | salt | 202.36 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 39.63 | HC |
| SRR2544786 | embryo | dry seed | 35.62 | HC |
| SRR4098172 | seedling | Cold (4C) | 73.15 | HC |
| SRR3140956 | leaf | "45C, 24h" | 75.73 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 19.38 | HC |
| SRR3140953 | leaf | "45C, 0h" | 8.29 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 88.70 | HC |
| SRR10956502 | panicle | WT | 177.19 | HC |
| SRR10956501 | panicle | WT | 174.52 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 177.36 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 13.79 | HC |
| SRR8258048 | leaf_sheath | R_bph | 285.00 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 88.21 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 46.98 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 71.72 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 19.98 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 45.34 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 274.75 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 167.77 | HC |
| SRR3110557 | shoot | shoot treated | 108.41 | HC |
| SRR5940086 | panicle | Wild type | 60.17 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 3.99 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 4.89 | HC |
| SRR8258051 | leaf_sheath | R_bph | 291.10 | HC |