| SRR10690151 | leaf | IRBB5_0h | 50.41 | HC |
| SRR2154072 | seed | Rathuwee_seed | 39.08 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 40.75 | HC |
| SRR2154070 | seed | Guangluai4_seed | 43.02 | HC |
| SRR2154071 | seed | KDM105_seed | 21.11 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 287.47 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 304.22 | HC |
| SRR8258050 | leaf_sheath | R_bph | 312.40 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 52.66 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 380.71 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 237.27 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 125.44 | HC |
| SRR10690152 | leaf | IRBB5_0h | 39.66 | HC |
| SRR6810106 | panicle | panicle | 34.70 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 18.24 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 8.99 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 70.55 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 53.01 | HC |
| SRR2154077 | seedling | KDM105_seedling | 40.70 | HC |
| SRR2154074 | seed | Nipponbare_seed | 33.37 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 56.06 | HC |
| SRR1061625 | panicle | Heat Stress | 20.94 | HC |
| SRR1061624 | panicle | Normal | 30.02 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 50.79 | HC |
| SRR1061622 | flag_leaf | Normal | 64.27 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 88.73 | HC |
| SRR1061620 | flag_leaf | Normal | 68.00 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 86.94 | HC |
| SRR10704058 | leaf | Glyphosate | 158.38 | HC |
| SRR447128 | root | As(III) 20 uM | 52.55 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 56.38 | HC |
| SRR1013787 | panicle | PA64s_PA | 180.55 | HC |
| SRR504363 | leaf | 93-11 X NPB | 636.67 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 55.11 | HC |
| SRR1013789 | panicle | 93-11_PA | 49.28 | HC |
| SRR1013788 | panicle | LYP9_PA | 71.23 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 48.45 | HC |
| SRR6810105 | panicle | panicle | 30.47 | HC |
| SRR089619 | panicle | control | 34.67 | HC |
| SRR447135 | shoot | As(III) 20 uM | 44.98 | HC |
| SRR447134 | shoot | As(III) 80 uM | 61.81 | HC |
| SRR447133 | shoot | As(III) 20 uM | 44.16 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 46.79 | HC |
| SRR447131 | root | As(III) 80 uM | 65.78 | HC |
| SRR447130 | root | As(III) 20 uM | 213.71 | HC |
| SRR1849765 | leaf | Control 30min | 92.37 | HC |
| SRR1849767 | leaf | Control 30min | 126.95 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 113.41 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 164.91 | HC |
| SRR6498701 | leaf | "WT, Control" | 123.60 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 86.17 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 519.20 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 17.89 | HC |
| SRR3203907 | leaf | WT | 58.56 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 139.19 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 54.88 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 52.94 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 9.51 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 18.03 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 8.44 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 14.58 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 22.71 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 24.80 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 24.63 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 27.11 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 234.70 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 16.27 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 15.16 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 18.28 | HC |
| SRR447129 | root | As(III) 80 uM | 79.77 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 39.66 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 86.13 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 105.94 | HC |
| SRR1849773 | leaf | Control 120min | 146.56 | HC |
| SRR1849772 | leaf | Control 120min | 108.08 | HC |
| SRR1849771 | leaf | Control 120min | 94.36 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 122.88 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 129.27 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 78.75 | HC |
| SRR3130370 | leaf | control 8 hour | 152.08 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 169.55 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 85.53 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 8.62 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 13.41 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 49.41 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 24.79 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 23.44 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 57.49 | HC |
| SRR447136 | shoot | As(III) 80 uM | 39.84 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 9.27 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 34.84 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 49.37 | HC |
| SRR10704060 | leaf | Glyphosate | 145.93 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 61.76 | HC |
| SRR2154075 | seed | Taipei309_seed | 21.45 | HC |
| SRR3140952 | leaf | "45C, 0h" | 17.07 | HC |
| SRR976171 | lamina_joint | wild type | 174.75 | HC |
| SRR3130369 | leaf | control 8 hour | 154.22 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 104.21 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 27.04 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 26.48 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 72.89 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 28.86 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 9.98 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 16.33 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 21.16 | HC |
| SRR3130365 | leaf | control 0 hour | 195.11 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 23.08 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 109.77 | HC |
| SRR3130366 | leaf | control 0 hour | 169.33 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 19.59 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 15.77 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 13.91 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 6.94 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 9.11 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 8.36 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 15.27 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 183.32 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 54.23 | HC |
| SRR2862363 | leaf | mock leaf cells | 155.09 | HC |
| SRR10704055 | leaf | CK | 69.97 | HC |
| SRR10704057 | leaf | CK | 229.15 | HC |
| SRR10704056 | leaf | CK | 95.76 | HC |
| SRR10704059 | leaf | Glyphosate | 25.51 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 43.94 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 22.57 | HC |
| SRR6498699 | leaf | "WT, Control" | 94.99 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 48.97 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 28.25 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 11.61 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 51.19 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 63.15 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 49.95 | HC |
| SRR10690143 | leaf | IR24_0h | 76.65 | HC |
| SRR10690142 | leaf | IR24_0h | 29.97 | HC |
| SRR2646852 | panicle | FP | 38.35 | HC |
| SRR2646853 | panicle | FP | 53.15 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 21.99 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 74.86 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 54.48 | HC |
| SRR2646854 | panicle | SP | 48.73 | HC |
| SRR2646855 | panicle | SP | 72.14 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 10.78 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 15.17 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 21.72 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 14.49 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 16.04 | HC |
| SRR6365692 | panicle | Wild type | 21.21 | HC |
| SRR6365693 | panicle | Wild type | 17.02 | HC |
| SRR6365694 | panicle | Wild type | 16.66 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 20.12 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 25.19 | HC |
| SRR6810101 | seedling | seedling | 83.67 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 188.59 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 185.56 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 13.39 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 216.50 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 194.95 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 15.48 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 16.99 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 77.37 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 71.77 | HC |
| SRR6365691 | panicle | Wild type | 20.92 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 12.60 | HC |
| SRR10690153 | leaf | IRBB5_0h | 53.17 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 14.48 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 15.67 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 16.47 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 45.44 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 17.42 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 19.54 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 192.86 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 28.76 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 313.15 | HC |
| SRR1061616 | panicle | Normal | 27.15 | HC |
| SRR1061617 | panicle | Heat Stress | 36.30 | HC |
| SRR1061614 | panicle | Normal | 14.12 | HC |
| SRR1061615 | panicle | Heat Stress | 31.60 | HC |
| SRR1061612 | panicle | Normal | 30.29 | HC |
| SRR1061613 | panicle | Heat Stress | 54.81 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 38.90 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 8.67 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 73.16 | HC |
| SRR1061618 | flag_leaf | Normal | 44.26 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 43.17 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 139.63 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 188.49 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 117.87 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 134.42 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 169.36 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 172.53 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 36.22 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 13.74 | HC |
| SRR3140954 | leaf | "45C, 12h" | 29.70 | HC |
| SRR089621 | panicle | cold | 41.73 | HC |
| SRR089620 | panicle | drought | 48.71 | HC |
| SRR3140957 | leaf | "45C, 24h" | 186.54 | HC |
| SRR089622 | panicle | salt | 17.68 | HC |
| SRR504360 | leaf | Nipponbare | 611.16 | HC |
| SRR504361 | leaf | Nov-93 | 584.05 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 34.36 | HC |
| SRR2544786 | embryo | dry seed | 19.71 | HC |
| SRR3140956 | leaf | "45C, 24h" | 61.79 | HC |
| SRR3140953 | leaf | "45C, 0h" | 17.35 | HC |
| SRR6810102 | seedling | seedling | 105.44 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 230.46 | HC |
| SRR10956502 | panicle | WT | 29.74 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 24.58 | HC |
| SRR10956501 | panicle | WT | 33.55 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 218.86 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 21.29 | HC |
| SRR8258048 | leaf_sheath | R_bph | 430.21 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 31.24 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 66.95 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 45.85 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 9.27 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 13.96 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 220.59 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 13.38 | HC |
| SRR1654490 | leaf | wild type | 83.94 | HC |
| SRR5940086 | panicle | Wild type | 54.43 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 30.14 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 16.60 | HC |
| SRR8258051 | leaf_sheath | R_bph | 348.48 | HC |
| SRR504362 | leaf | NPB X 93-11 | 385.84 | HC |