| SRR3140955 | leaf | "45C, 12h" | 2.01 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 1.19 | MC |
| SRR6810106 | panicle | panicle | 2.16 | MC |
| SRR7058097 | leaf | rice_mock | 12.49 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 1.50 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 1.31 | MC |
| SRR7058098 | leaf | rice_RSV | 14.05 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.68 | MC |
| SRR10690151 | leaf | IRBB5_0h | 14.92 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.85 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 0.45 | MC |
| SRR2154070 | seed | Guangluai4_seed | 0.43 | MC |
| SRR2154071 | seed | KDM105_seed | 3.67 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 3.26 | MC |
| SRR1061625 | panicle | Heat Stress | 2.11 | MC |
| SRR1061624 | panicle | Normal | 3.93 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 2.35 | MC |
| SRR447128 | root | As(III) 20 uM | 0.52 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 5.54 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.30 | MC |
| SRR504363 | leaf | 93-11 X NPB | 1.43 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 1.80 | MC |
| SRR9070101 | shoot_base | WT_base | 0.83 | MC |
| SRR6810105 | panicle | panicle | 1.32 | MC |
| SRR089619 | panicle | control | 2.35 | MC |
| SRR447135 | shoot | As(III) 20 uM | 5.44 | MC |
| SRR447134 | shoot | As(III) 80 uM | 7.18 | MC |
| SRR447133 | shoot | As(III) 20 uM | 1.39 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 0.92 | MC |
| SRR447130 | root | As(III) 20 uM | 0.52 | MC |
| SRR1849765 | leaf | Control 30min | 4.05 | MC |
| SRR1849767 | leaf | Control 30min | 1.36 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 6.63 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.38 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 22.39 | MC |
| SRR6498701 | leaf | "WT, Control" | 27.12 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 12.49 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 11.34 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 9.15 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 5.83 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 4.19 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 6.40 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 9.57 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.55 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.36 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 5.03 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 2.66 | MC |
| SRR1849773 | leaf | Control 120min | 7.69 | MC |
| SRR1849772 | leaf | Control 120min | 4.27 | MC |
| SRR1849771 | leaf | Control 120min | 4.94 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 3.17 | MC |
| SRR7058096 | leaf | rice_mock | 16.19 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 4.16 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.38 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.52 | MC |
| SRR6365689 | seedling | Wild type | 0.83 | MC |
| SRR447136 | shoot | As(III) 80 uM | 0.52 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 1.73 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.64 | MC |
| SRR2154075 | seed | Taipei309_seed | 0.56 | MC |
| SRR3140952 | leaf | "45C, 0h" | 7.17 | MC |
| SRR4098209 | leaf | No treatment | 9.62 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.74 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.57 | MC |
| SRR9070100 | shoot_base | WT_base | 0.69 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.98 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 10.32 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.52 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.36 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.14 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.68 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 2.94 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 2.43 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 2.01 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 32.48 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 1.90 | MC |
| SRR2862363 | leaf | mock leaf cells | 28.04 | MC |
| SRR8649147 | panicle | panicle tissue | 0.94 | MC |
| SRR4098207 | panicle | No treatment | 0.93 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 7.76 | MC |
| SRR9070102 | shoot_base | WT_base | 0.74 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.67 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 0.94 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 1.71 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 0.59 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 2.54 | MC |
| SRR4098203 | seedling | No treatment | 0.86 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.99 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.52 | MC |
| SRR6365690 | seedling | Wild type | 0.70 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 1.97 | MC |
| SRR6365692 | panicle | Wild type | 3.26 | MC |
| SRR6365693 | panicle | Wild type | 4.30 | MC |
| SRR6365694 | panicle | Wild type | 2.34 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 0.52 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 1.08 | MC |
| SRR6810101 | seedling | seedling | 16.31 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 27.81 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.98 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.30 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 2.28 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 4.77 | MC |
| SRR6365691 | panicle | Wild type | 4.80 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.44 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 1.09 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1.54 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 4.44 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 4.18 | MC |
| SRR3110556 | shoot | shoot control | 30.35 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 0.40 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 0.64 | MC |
| SRR1061616 | panicle | Normal | 3.09 | MC |
| SRR1061617 | panicle | Heat Stress | 4.63 | MC |
| SRR1061614 | panicle | Normal | 3.54 | MC |
| SRR1061615 | panicle | Heat Stress | 3.60 | MC |
| SRR1061612 | panicle | Normal | 4.88 | MC |
| SRR1061613 | panicle | Heat Stress | 4.13 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.69 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.48 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 4.52 | MC |
| SRR6810103 | flag_leaf | flag_leaf | 6.68 | MC |
| SRR1061618 | flag_leaf | Normal | 10.45 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 12.74 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.65 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 0.40 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 25.23 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 4.92 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.34 | MC |
| SRR3140954 | leaf | "45C, 12h" | 9.51 | MC |
| SRR089621 | panicle | cold | 0.60 | MC |
| SRR089620 | panicle | drought | 1.73 | MC |
| SRR089622 | panicle | salt | 3.57 | MC |
| SRR504360 | leaf | Nipponbare | 3.07 | MC |
| SRR504361 | leaf | Nov-93 | 2.31 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.26 | MC |
| SRR4098172 | seedling | Cold (4C) | 4.42 | MC |
| SRR3140956 | leaf | "45C, 24h" | 11.23 | MC |
| SRR3140953 | leaf | "45C, 0h" | 3.26 | MC |
| SRR6810102 | seedling | seedling | 25.17 | MC |
| SRR1740023 | seedling | IR64-Control | 0.96 | MC |
| SRR1740025 | seedling | PK-Control | 0.48 | MC |
| SRR1740024 | seedling | N22-Control | 0.85 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.27 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.30 | MC |
| SRR1654490 | leaf | wild type | 14.22 | MC |
| SRR3110557 | shoot | shoot treated | 12.99 | MC |
| SRR5940086 | panicle | Wild type | 5.08 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.20 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.40 | MC |
| SRR504362 | leaf | NPB X 93-11 | 2.04 | MC |