| SRR447134 | shoot | As(III) 80 uM | 95.11 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 2066.59 | HC |
| SRR3140955 | leaf | "45C, 12h" | 17.74 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 3061.33 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 18.23 | HC |
| SRR8258050 | leaf_sheath | R_bph | 3829.24 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 723.50 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 2928.39 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 2238.38 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 1680.32 | HC |
| SRR10690152 | leaf | IRBB5_0h | 3309.88 | HC |
| SRR6810106 | panicle | panicle | 42.66 | HC |
| SRR7058097 | leaf | rice_mock | 2707.48 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 109.11 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 173.82 | HC |
| SRR7058098 | leaf | rice_RSV | 1724.90 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 2090.81 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 51.12 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 1286.30 | HC |
| SRR2154077 | seedling | KDM105_seedling | 1019.39 | HC |
| SRR2154074 | seed | Nipponbare_seed | 33.57 | HC |
| SRR10690151 | leaf | IRBB5_0h | 3977.49 | HC |
| SRR2154072 | seed | Rathuwee_seed | 32.04 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 70.82 | HC |
| SRR2154070 | seed | Guangluai4_seed | 33.04 | HC |
| SRR2154071 | seed | KDM105_seed | 48.21 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 922.94 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2094.08 | HC |
| SRR1061625 | panicle | Heat Stress | 87.98 | HC |
| SRR1061624 | panicle | Normal | 347.89 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 165.52 | HC |
| SRR1061622 | flag_leaf | Normal | 167.81 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 307.38 | HC |
| SRR1061620 | flag_leaf | Normal | 170.02 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2977.98 | HC |
| SRR10704058 | leaf | Glyphosate | 263.25 | HC |
| SRR447128 | root | As(III) 20 uM | 131.49 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3816.76 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 247.81 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 21.85 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 2200.26 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 1684.49 | HC |
| SRR1013787 | panicle | PA64s_PA | 1992.98 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 2610.21 | HC |
| SRR504363 | leaf | 93-11 X NPB | 1879.30 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 134.33 | HC |
| SRR1013789 | panicle | 93-11_PA | 524.12 | HC |
| SRR1013788 | panicle | LYP9_PA | 754.13 | HC |
| SRR9070101 | shoot_base | WT_base | 58.82 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 1982.06 | HC |
| SRR6810105 | panicle | panicle | 48.52 | HC |
| SRR089619 | panicle | control | 411.00 | HC |
| SRR447135 | shoot | As(III) 20 uM | 153.99 | HC |
| SRR447133 | shoot | As(III) 20 uM | 190.84 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 61.30 | HC |
| SRR447131 | root | As(III) 80 uM | 230.24 | HC |
| SRR447130 | root | As(III) 20 uM | 346.80 | HC |
| SRR1849765 | leaf | Control 30min | 214.48 | HC |
| SRR1849767 | leaf | Control 30min | 307.37 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 49.00 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 284.17 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 60.64 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 641.59 | HC |
| SRR6498701 | leaf | "WT, Control" | 359.95 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 501.48 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 7885.56 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 20.09 | HC |
| SRR3203907 | leaf | WT | 1077.14 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 434.75 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 3688.25 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 2371.98 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1084.73 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 2742.08 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 389.20 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 1546.07 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1767.38 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1440.96 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 1497.18 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 3166.02 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 7342.57 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 24.47 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 25.66 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 30.07 | HC |
| SRR447129 | root | As(III) 80 uM | 79.53 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 81.61 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 186.69 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 275.24 | HC |
| SRR1849773 | leaf | Control 120min | 274.98 | HC |
| SRR1849772 | leaf | Control 120min | 230.83 | HC |
| SRR1849771 | leaf | Control 120min | 247.01 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 278.98 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 1472.29 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 438.09 | HC |
| SRR3130370 | leaf | control 8 hour | 1121.30 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 1354.74 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 441.50 | HC |
| SRR7058096 | leaf | rice_mock | 3163.74 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 26.78 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 38.90 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 1562.48 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 11.37 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 248.15 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 463.60 | HC |
| SRR6365689 | seedling | Wild type | 32.14 | HC |
| SRR447136 | shoot | As(III) 80 uM | 66.24 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 19.52 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 714.10 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 25.60 | HC |
| SRR10704060 | leaf | Glyphosate | 305.54 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 650.52 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 37.47 | HC |
| SRR2154075 | seed | Taipei309_seed | 48.68 | HC |
| SRR3140952 | leaf | "45C, 0h" | 54.12 | HC |
| SRR976171 | lamina_joint | wild type | 152.75 | HC |
| SRR4098208 | root | No treatment | 41.55 | HC |
| SRR089774 | panicle | wild-type | 442.62 | HC |
| SRR089772 | panicle | wild-type | 539.04 | HC |
| SRR4098209 | leaf | No treatment | 333.99 | HC |
| SRR3130369 | leaf | control 8 hour | 1110.18 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 913.96 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 252.79 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 23.73 | HC |
| SRR9070100 | shoot_base | WT_base | 61.09 | HC |
| SRR4098205 | seedling | Heat (50C) | 87.40 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 334.14 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 201.59 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 14.02 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 25.17 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 262.03 | HC |
| SRR3130365 | leaf | control 0 hour | 1079.08 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 249.41 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 715.92 | HC |
| SRR3130366 | leaf | control 0 hour | 1150.94 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 22.94 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 22.91 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 14.06 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 24.08 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 21.02 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 19.69 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 46.62 | HC |
| SRR2862364 | leaf | mock leaf cells | 1867.66 | HC |
| SRR2862365 | leaf | mock leaf cells | 885.35 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 3945.65 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 616.64 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 73.12 | HC |
| SRR2862363 | leaf | mock leaf cells | 3875.93 | HC |
| SRR8649147 | panicle | panicle tissue | 92.75 | HC |
| SRR4098207 | panicle | No treatment | 77.36 | HC |
| SRR10704055 | leaf | CK | 121.09 | HC |
| SRR10704057 | leaf | CK | 307.05 | HC |
| SRR10704056 | leaf | CK | 139.16 | HC |
| SRR10704059 | leaf | Glyphosate | 49.15 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 214.72 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 186.07 | HC |
| SRR9070102 | shoot_base | WT_base | 48.64 | HC |
| SRR6498699 | leaf | "WT, Control" | 352.57 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 1283.77 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 1376.55 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 26.16 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4794.97 | HC |
| SRR10690144 | leaf | IR24_0h | 5938.65 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 3137.39 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4363.37 | HC |
| SRR10690143 | leaf | IR24_0h | 7506.49 | HC |
| SRR10690142 | leaf | IR24_0h | 6515.40 | HC |
| SRR2646852 | panicle | FP | 20.55 | HC |
| SRR2646853 | panicle | FP | 45.89 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 70.29 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 21.60 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 2871.50 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3184.33 | HC |
| SRR2646854 | panicle | SP | 21.14 | HC |
| SRR2646855 | panicle | SP | 26.53 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 20.66 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 130.55 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 65.15 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 143.20 | HC |
| SRR4098203 | seedling | No treatment | 41.50 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 27.71 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 69.76 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 63.21 | HC |
| SRR6365690 | seedling | Wild type | 32.04 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 27.20 | HC |
| SRR6365692 | panicle | Wild type | 87.69 | HC |
| SRR6365693 | panicle | Wild type | 138.83 | HC |
| SRR6365694 | panicle | Wild type | 136.70 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 69.65 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 23.01 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 13.98 | HC |
| SRR6810101 | seedling | seedling | 467.04 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1719.38 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1966.75 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 70.02 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 68.20 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 1987.85 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 2239.07 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 40.04 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 279.46 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 685.71 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3767.64 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2750.59 | HC |
| SRR1849784 | root | Control 120min | 30.33 | HC |
| SRR6365691 | panicle | Wild type | 80.61 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 245.35 | HC |
| SRR10690153 | leaf | IRBB5_0h | 2369.77 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 114.51 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 148.22 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 308.96 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4224.89 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 1010.25 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 413.88 | HC |
| SRR3110556 | shoot | shoot control | 1412.72 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 2297.56 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 209.47 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 4978.98 | HC |
| SRR1061616 | panicle | Normal | 144.04 | HC |
| SRR1061617 | panicle | Heat Stress | 388.12 | HC |
| SRR1061614 | panicle | Normal | 140.28 | HC |
| SRR1061615 | panicle | Heat Stress | 522.51 | HC |
| SRR1061612 | panicle | Normal | 185.30 | HC |
| SRR1061613 | panicle | Heat Stress | 258.10 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 7.94 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 20.06 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 77.50 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 321.57 | HC |
| SRR1061618 | flag_leaf | Normal | 123.94 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 247.55 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 894.35 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 930.87 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 23.19 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 594.71 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1157.99 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1081.52 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1581.78 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 129.28 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 19.30 | HC |
| SRR3140954 | leaf | "45C, 12h" | 155.52 | HC |
| SRR089621 | panicle | cold | 514.78 | HC |
| SRR089620 | panicle | drought | 767.98 | HC |
| SRR3140957 | leaf | "45C, 24h" | 431.33 | HC |
| SRR089622 | panicle | salt | 410.62 | HC |
| SRR504360 | leaf | Nipponbare | 780.95 | HC |
| SRR504361 | leaf | Nov-93 | 3162.97 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 132.59 | HC |
| SRR2544786 | embryo | dry seed | 82.12 | HC |
| SRR4098172 | seedling | Cold (4C) | 108.58 | HC |
| SRR3140956 | leaf | "45C, 24h" | 117.64 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 17.64 | HC |
| SRR3140953 | leaf | "45C, 0h" | 82.68 | HC |
| SRR6810102 | seedling | seedling | 605.96 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 2092.03 | HC |
| SRR10956502 | panicle | WT | 201.83 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 972.51 | HC |
| SRR10956501 | panicle | WT | 212.27 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 2266.97 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 432.44 | HC |
| SRR8258048 | leaf_sheath | R_bph | 4321.53 | HC |
| SRR1740023 | seedling | IR64-Control | 84.75 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 1213.12 | HC |
| SRR1740025 | seedling | PK-Control | 89.15 | HC |
| SRR1740024 | seedling | N22-Control | 58.97 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 567.45 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 572.88 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 21.12 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 12.68 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 2054.93 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 7.36 | HC |
| SRR1654490 | leaf | wild type | 1141.68 | HC |
| SRR3110557 | shoot | shoot treated | 2357.44 | HC |
| SRR5940086 | panicle | Wild type | 328.32 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 431.64 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 242.09 | HC |
| SRR8258051 | leaf_sheath | R_bph | 4198.51 | HC |
| SRR504362 | leaf | NPB X 93-11 | 1797.34 | HC |