| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 232.43 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 653.60 | HC |
| SRR3140955 | leaf | "45C, 12h" | 25.78 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 430.28 | HC |
| SRR8258050 | leaf_sheath | R_bph | 1029.66 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 183.36 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 370.40 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 614.85 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 653.45 | HC |
| SRR10690152 | leaf | IRBB5_0h | 385.75 | HC |
| SRR6810106 | panicle | panicle | 16.39 | HC |
| SRR7058097 | leaf | rice_mock | 3326.29 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 93.36 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 54.42 | HC |
| SRR7058098 | leaf | rice_RSV | 2782.01 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 292.79 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 499.68 | HC |
| SRR2154077 | seedling | KDM105_seedling | 446.79 | HC |
| SRR2154074 | seed | Nipponbare_seed | 689.23 | HC |
| SRR10690151 | leaf | IRBB5_0h | 266.36 | HC |
| SRR2154072 | seed | Rathuwee_seed | 226.40 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 176.64 | HC |
| SRR2154070 | seed | Guangluai4_seed | 188.27 | HC |
| SRR2154071 | seed | KDM105_seed | 145.11 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 38.69 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 315.80 | HC |
| SRR1061625 | panicle | Heat Stress | 37.63 | HC |
| SRR1061624 | panicle | Normal | 58.19 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 123.80 | HC |
| SRR1061622 | flag_leaf | Normal | 86.79 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 83.28 | HC |
| SRR1061620 | flag_leaf | Normal | 113.25 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 371.82 | HC |
| SRR10704058 | leaf | Glyphosate | 86.79 | HC |
| SRR447128 | root | As(III) 20 uM | 37.63 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 197.04 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 194.51 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 541.31 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 608.38 | HC |
| SRR1013787 | panicle | PA64s_PA | 108.57 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 384.12 | HC |
| SRR504363 | leaf | 93-11 X NPB | 119.86 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 141.28 | HC |
| SRR1013789 | panicle | 93-11_PA | 90.28 | HC |
| SRR1013788 | panicle | LYP9_PA | 105.86 | HC |
| SRR9070101 | shoot_base | WT_base | 182.87 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 392.17 | HC |
| SRR6810105 | panicle | panicle | 16.75 | HC |
| SRR089619 | panicle | control | 120.85 | HC |
| SRR447135 | shoot | As(III) 20 uM | 134.20 | HC |
| SRR447134 | shoot | As(III) 80 uM | 85.76 | HC |
| SRR447133 | shoot | As(III) 20 uM | 86.46 | HC |
| SRR447131 | root | As(III) 80 uM | 50.91 | HC |
| SRR447130 | root | As(III) 20 uM | 94.81 | HC |
| SRR1849765 | leaf | Control 30min | 219.88 | HC |
| SRR1849767 | leaf | Control 30min | 166.82 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 42.66 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 211.14 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 191.23 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 205.07 | HC |
| SRR6498701 | leaf | "WT, Control" | 153.83 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 178.51 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 365.28 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 28.19 | HC |
| SRR3203907 | leaf | WT | 207.62 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 198.55 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 297.41 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 208.09 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 153.83 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 259.15 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 76.12 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 122.08 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 199.44 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 152.91 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 160.46 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 283.96 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 212.87 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 209.68 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 203.79 | HC |
| SRR447129 | root | As(III) 80 uM | 10.31 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 84.66 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 196.15 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 220.40 | HC |
| SRR1849773 | leaf | Control 120min | 240.42 | HC |
| SRR1849772 | leaf | Control 120min | 165.48 | HC |
| SRR1849771 | leaf | Control 120min | 208.97 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 177.73 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 267.79 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 105.38 | HC |
| SRR3130370 | leaf | control 8 hour | 289.00 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 307.67 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 122.18 | HC |
| SRR7058096 | leaf | rice_mock | 4414.50 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 16.50 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 42.49 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 1282.70 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 138.96 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 142.94 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 181.41 | HC |
| SRR6365689 | seedling | Wild type | 29.38 | HC |
| SRR447136 | shoot | As(III) 80 uM | 22.43 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 194.86 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 168.29 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 73.84 | HC |
| SRR10704060 | leaf | Glyphosate | 48.61 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 171.71 | HC |
| SRR2154075 | seed | Taipei309_seed | 457.66 | HC |
| SRR3140952 | leaf | "45C, 0h" | 30.06 | HC |
| SRR976171 | lamina_joint | wild type | 461.84 | HC |
| SRR4098208 | root | No treatment | 127.74 | HC |
| SRR4098209 | leaf | No treatment | 162.16 | HC |
| SRR3130369 | leaf | control 8 hour | 247.45 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 218.78 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 157.07 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 171.55 | HC |
| SRR9070100 | shoot_base | WT_base | 237.09 | HC |
| SRR4098205 | seedling | Heat (50C) | 138.16 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 48.91 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 168.79 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 208.19 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 203.07 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 161.68 | HC |
| SRR3130365 | leaf | control 0 hour | 262.01 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 140.55 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 178.96 | HC |
| SRR3130366 | leaf | control 0 hour | 215.20 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 8.81 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 11.34 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 5.78 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 3.83 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 4.37 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 4.18 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 27.27 | HC |
| SRR2862364 | leaf | mock leaf cells | 30.70 | HC |
| SRR2862365 | leaf | mock leaf cells | 78.93 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 824.79 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 66.87 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 69.09 | HC |
| SRR2862363 | leaf | mock leaf cells | 870.93 | HC |
| SRR8649147 | panicle | panicle tissue | 16.06 | HC |
| SRR4098207 | panicle | No treatment | 21.19 | HC |
| SRR10704055 | leaf | CK | 164.56 | HC |
| SRR10704057 | leaf | CK | 116.41 | HC |
| SRR10704056 | leaf | CK | 134.11 | HC |
| SRR10704059 | leaf | Glyphosate | 424.12 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 46.28 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 140.56 | HC |
| SRR9070102 | shoot_base | WT_base | 190.66 | HC |
| SRR6498699 | leaf | "WT, Control" | 131.84 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 754.95 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 1107.32 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 197.42 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 411.46 | HC |
| SRR10690144 | leaf | IR24_0h | 312.98 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 177.04 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 307.86 | HC |
| SRR10690143 | leaf | IR24_0h | 332.51 | HC |
| SRR10690142 | leaf | IR24_0h | 498.38 | HC |
| SRR2646852 | panicle | FP | 24.59 | HC |
| SRR2646853 | panicle | FP | 35.62 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 68.33 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 213.40 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 304.59 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 229.94 | HC |
| SRR2646854 | panicle | SP | 23.60 | HC |
| SRR2646855 | panicle | SP | 19.70 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 65.95 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 59.51 | HC |
| SRR4098203 | seedling | No treatment | 91.76 | HC |
| SRR6365690 | seedling | Wild type | 29.56 | HC |
| SRR6365692 | panicle | Wild type | 79.55 | HC |
| SRR6365693 | panicle | Wild type | 27.42 | HC |
| SRR6365694 | panicle | Wild type | 27.41 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 176.46 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 36.32 | HC |
| SRR6810101 | seedling | seedling | 134.37 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 446.68 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 434.56 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 51.14 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 1099.96 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 655.77 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 43.88 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 88.30 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 306.72 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 250.90 | HC |
| SRR1849784 | root | Control 120min | 85.78 | HC |
| SRR6365691 | panicle | Wild type | 96.31 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 219.63 | HC |
| SRR10690153 | leaf | IRBB5_0h | 88.29 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 216.82 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 372.46 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 185.28 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 208.25 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 104.42 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 121.88 | HC |
| SRR3110556 | shoot | shoot control | 1538.48 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 111.09 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 137.34 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 283.32 | HC |
| SRR1061616 | panicle | Normal | 27.04 | HC |
| SRR1061617 | panicle | Heat Stress | 24.59 | HC |
| SRR1061614 | panicle | Normal | 15.18 | HC |
| SRR1061615 | panicle | Heat Stress | 19.62 | HC |
| SRR1061612 | panicle | Normal | 23.77 | HC |
| SRR1061613 | panicle | Heat Stress | 25.95 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 6.56 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 194.81 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 153.62 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 55.98 | HC |
| SRR1061618 | flag_leaf | Normal | 184.82 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 155.46 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 128.83 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 88.78 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 190.87 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 110.34 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 343.52 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 310.60 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 348.06 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 503.40 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 192.59 | HC |
| SRR3140954 | leaf | "45C, 12h" | 90.87 | HC |
| SRR089621 | panicle | cold | 103.54 | HC |
| SRR089620 | panicle | drought | 116.00 | HC |
| SRR3140957 | leaf | "45C, 24h" | 74.17 | HC |
| SRR089622 | panicle | salt | 122.18 | HC |
| SRR504360 | leaf | Nipponbare | 202.28 | HC |
| SRR504361 | leaf | Nov-93 | 54.37 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 532.93 | HC |
| SRR2544786 | embryo | dry seed | 345.14 | HC |
| SRR4098172 | seedling | Cold (4C) | 46.22 | HC |
| SRR3140956 | leaf | "45C, 24h" | 127.13 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 184.25 | HC |
| SRR3140953 | leaf | "45C, 0h" | 36.67 | HC |
| SRR6810102 | seedling | seedling | 143.52 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 392.19 | HC |
| SRR10956502 | panicle | WT | 55.41 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 105.78 | HC |
| SRR10956501 | panicle | WT | 56.00 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 1023.68 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 178.68 | HC |
| SRR8258048 | leaf_sheath | R_bph | 1123.89 | HC |
| SRR1740023 | seedling | IR64-Control | 22.38 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 866.00 | HC |
| SRR1740025 | seedling | PK-Control | 17.94 | HC |
| SRR1740024 | seedling | N22-Control | 77.36 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 157.15 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 182.64 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 190.06 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 66.48 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 830.66 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 102.34 | HC |
| SRR1654490 | leaf | wild type | 137.60 | HC |
| SRR3110557 | shoot | shoot treated | 1092.71 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 59.50 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 93.82 | HC |
| SRR8258051 | leaf_sheath | R_bph | 804.54 | HC |
| SRR504362 | leaf | NPB X 93-11 | 82.70 | HC |