| SRR4098209 | leaf | No treatment | 543.14 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 4277.27 | HC |
| SRR3140955 | leaf | "45C, 12h" | 169.82 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 6236.88 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 3415.61 | HC |
| SRR8258050 | leaf_sheath | R_bph | 4172.59 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 68356.51 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 4585.89 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 5198.74 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 5821.95 | HC |
| SRR10690152 | leaf | IRBB5_0h | 31665.94 | HC |
| SRR6810106 | panicle | panicle | 5991.31 | HC |
| SRR7058097 | leaf | rice_mock | 7781.08 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 50.59 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 756.02 | HC |
| SRR7058098 | leaf | rice_RSV | 7027.61 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3928.02 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 3068.05 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 2322.14 | HC |
| SRR2154077 | seedling | KDM105_seedling | 2647.62 | HC |
| SRR2154074 | seed | Nipponbare_seed | 2548.55 | HC |
| SRR10690151 | leaf | IRBB5_0h | 22901.51 | HC |
| SRR2154072 | seed | Rathuwee_seed | 1456.12 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 2846.88 | HC |
| SRR2154070 | seed | Guangluai4_seed | 3003.87 | HC |
| SRR2154071 | seed | KDM105_seed | 863.78 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 381.44 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 5022.60 | HC |
| SRR1061625 | panicle | Heat Stress | 14508.40 | HC |
| SRR1061624 | panicle | Normal | 40432.75 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 19834.55 | HC |
| SRR1061622 | flag_leaf | Normal | 33897.58 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 47797.01 | HC |
| SRR1061620 | flag_leaf | Normal | 36642.22 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 12319.26 | HC |
| SRR10704058 | leaf | Glyphosate | 8154.86 | HC |
| SRR447128 | root | As(III) 20 uM | 1886.82 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 14578.18 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 8750.89 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 13057.85 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 1724.46 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 1151.33 | HC |
| SRR1013787 | panicle | PA64s_PA | 14787.16 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 1692.23 | HC |
| SRR504363 | leaf | 93-11 X NPB | 5831.60 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 361.71 | HC |
| SRR1013789 | panicle | 93-11_PA | 5005.57 | HC |
| SRR1013788 | panicle | LYP9_PA | 6500.43 | HC |
| SRR9070101 | shoot_base | WT_base | 742.77 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 5489.53 | HC |
| SRR6810105 | panicle | panicle | 5341.85 | HC |
| SRR089619 | panicle | control | 643.21 | HC |
| SRR447135 | shoot | As(III) 20 uM | 199.87 | HC |
| SRR447134 | shoot | As(III) 80 uM | 586.01 | HC |
| SRR447133 | shoot | As(III) 20 uM | 394.71 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 808.31 | HC |
| SRR447131 | root | As(III) 80 uM | 653.16 | HC |
| SRR447130 | root | As(III) 20 uM | 4511.03 | HC |
| SRR1849765 | leaf | Control 30min | 13050.97 | HC |
| SRR1849767 | leaf | Control 30min | 15379.66 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 2622.08 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 15900.84 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 1471.77 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 55229.94 | HC |
| SRR6498701 | leaf | "WT, Control" | 48987.28 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 85860.32 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 1909.61 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 12175.95 | HC |
| SRR3203907 | leaf | WT | 12986.56 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 37138.25 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 3252.04 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 1615.26 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1019.28 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 2290.84 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 415.90 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 1143.82 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1840.12 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1493.12 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 1615.74 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 2823.02 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 1172.19 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 15612.01 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 17866.12 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 21752.26 | HC |
| SRR447129 | root | As(III) 80 uM | 2286.68 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 4952.68 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 13701.62 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 16653.58 | HC |
| SRR1849773 | leaf | Control 120min | 12513.34 | HC |
| SRR1849772 | leaf | Control 120min | 15694.43 | HC |
| SRR1849771 | leaf | Control 120min | 15835.66 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 13502.10 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 5795.99 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 2615.62 | HC |
| SRR3130370 | leaf | control 8 hour | 7051.67 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 10080.86 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 3159.71 | HC |
| SRR7058096 | leaf | rice_mock | 8794.83 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 1518.01 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 1731.32 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 3129.40 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 18272.69 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 7712.47 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 66936.13 | HC |
| SRR6365689 | seedling | Wild type | 1423.41 | HC |
| SRR447136 | shoot | As(III) 80 uM | 812.39 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 6953.78 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 91984.88 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 15779.52 | HC |
| SRR10704060 | leaf | Glyphosate | 4103.37 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 67607.36 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 6981.76 | HC |
| SRR2154075 | seed | Taipei309_seed | 1690.26 | HC |
| SRR3140952 | leaf | "45C, 0h" | 696.07 | HC |
| SRR976171 | lamina_joint | wild type | 3146.91 | HC |
| SRR4098208 | root | No treatment | 2521.47 | HC |
| SRR089774 | panicle | wild-type | 33.95 | HC |
| SRR089772 | panicle | wild-type | 32.33 | HC |
| SRR3130369 | leaf | control 8 hour | 6298.01 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 5700.78 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 6415.27 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 14226.99 | HC |
| SRR9070100 | shoot_base | WT_base | 791.44 | HC |
| SRR4098205 | seedling | Heat (50C) | 432.52 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 21989.06 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 7980.58 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 12750.20 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 13170.97 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 12443.92 | HC |
| SRR3130365 | leaf | control 0 hour | 12842.00 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 7996.33 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 4616.01 | HC |
| SRR3130366 | leaf | control 0 hour | 6136.13 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 4106.71 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 4167.74 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 2673.41 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 2192.28 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 1088.38 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 1097.28 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 2810.86 | HC |
| SRR2862364 | leaf | mock leaf cells | 984.99 | HC |
| SRR2862365 | leaf | mock leaf cells | 918.86 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 3120.50 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 1004.88 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 1172.73 | HC |
| SRR2862363 | leaf | mock leaf cells | 2485.74 | HC |
| SRR8649147 | panicle | panicle tissue | 77455.60 | HC |
| SRR4098207 | panicle | No treatment | 375.23 | HC |
| SRR10704055 | leaf | CK | 3864.76 | HC |
| SRR10704057 | leaf | CK | 12178.38 | HC |
| SRR10704056 | leaf | CK | 4217.79 | HC |
| SRR10704059 | leaf | Glyphosate | 1890.07 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 28819.91 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6172.71 | HC |
| SRR9070102 | shoot_base | WT_base | 556.09 | HC |
| SRR6498699 | leaf | "WT, Control" | 45632.04 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 2228.12 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 3439.84 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 13562.90 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 15921.63 | HC |
| SRR10690144 | leaf | IR24_0h | 7107.76 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4821.91 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 10592.76 | HC |
| SRR10690143 | leaf | IR24_0h | 21014.03 | HC |
| SRR10690142 | leaf | IR24_0h | 20978.12 | HC |
| SRR2646852 | panicle | FP | 47391.89 | HC |
| SRR2646853 | panicle | FP | 23320.34 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 8475.27 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 13132.77 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 9869.61 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 11058.91 | HC |
| SRR2646854 | panicle | SP | 25213.16 | HC |
| SRR2646855 | panicle | SP | 17633.98 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 8507.07 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 5755.59 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 14871.81 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 2156.80 | HC |
| SRR4098203 | seedling | No treatment | 405.88 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 7395.60 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 5556.13 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 6355.69 | HC |
| SRR6365690 | seedling | Wild type | 1090.46 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 1880.97 | HC |
| SRR6365692 | panicle | Wild type | 1698.82 | HC |
| SRR6365693 | panicle | Wild type | 12000.88 | HC |
| SRR6365694 | panicle | Wild type | 11666.23 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 1506.30 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 7035.07 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 13708.11 | HC |
| SRR6810101 | seedling | seedling | 20357.18 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 3212.64 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 3688.02 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 5504.03 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 4649.99 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 3029.64 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 6116.17 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 2415.71 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 321.83 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 1114.97 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 12607.83 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 5112.68 | HC |
| SRR1849784 | root | Control 120min | 14082.44 | HC |
| SRR6365691 | panicle | Wild type | 1825.78 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 2084.91 | HC |
| SRR10690153 | leaf | IRBB5_0h | 12123.85 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 926.49 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 3453.67 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 1580.59 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 16824.98 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 2156.93 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 860.02 | HC |
| SRR3110556 | shoot | shoot control | 8541.49 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 8229.98 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 5182.03 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 10572.23 | HC |
| SRR1061616 | panicle | Normal | 13306.69 | HC |
| SRR1061617 | panicle | Heat Stress | 34668.92 | HC |
| SRR1061614 | panicle | Normal | 19684.23 | HC |
| SRR1061615 | panicle | Heat Stress | 44359.90 | HC |
| SRR1061612 | panicle | Normal | 16785.45 | HC |
| SRR1061613 | panicle | Heat Stress | 19728.82 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 16643.74 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 11966.78 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 2860.68 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 19477.19 | HC |
| SRR1061618 | flag_leaf | Normal | 26639.64 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 24922.01 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 189.14 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 447.83 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 7288.06 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 2851.63 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 3006.16 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 2762.39 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 2847.59 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 43267.05 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 7644.48 | HC |
| SRR3140954 | leaf | "45C, 12h" | 1230.23 | HC |
| SRR089621 | panicle | cold | 1192.56 | HC |
| SRR089620 | panicle | drought | 687.11 | HC |
| SRR3140957 | leaf | "45C, 24h" | 2758.49 | HC |
| SRR089622 | panicle | salt | 353.30 | HC |
| SRR504360 | leaf | Nipponbare | 3561.79 | HC |
| SRR504361 | leaf | Nov-93 | 5929.66 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 37228.01 | HC |
| SRR2544786 | embryo | dry seed | 12735.15 | HC |
| SRR4098172 | seedling | Cold (4C) | 700.73 | HC |
| SRR3140956 | leaf | "45C, 24h" | 2738.18 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 10667.04 | HC |
| SRR3140953 | leaf | "45C, 0h" | 1010.41 | HC |
| SRR6810102 | seedling | seedling | 25919.43 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 3396.73 | HC |
| SRR10956502 | panicle | WT | 16486.56 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 1002.50 | HC |
| SRR10956501 | panicle | WT | 17035.20 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 3711.13 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 3103.28 | HC |
| SRR8258048 | leaf_sheath | R_bph | 4312.80 | HC |
| SRR1740023 | seedling | IR64-Control | 2122.26 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 2216.86 | HC |
| SRR1740025 | seedling | PK-Control | 1715.13 | HC |
| SRR1740024 | seedling | N22-Control | 1646.04 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 71216.46 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 75371.07 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 12102.97 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 21513.87 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 4185.77 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 11855.85 | HC |
| SRR1654490 | leaf | wild type | 15681.85 | HC |
| SRR3110557 | shoot | shoot treated | 6965.23 | HC |
| SRR5940086 | panicle | Wild type | 40681.54 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 2122.40 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 2685.45 | HC |
| SRR8258051 | leaf_sheath | R_bph | 4010.28 | HC |
| SRR504362 | leaf | NPB X 93-11 | 2954.84 | HC |