| SRR5120079 | leaf_sheath | PC_0 | 1.73 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 0.52 | MC |
| SRR7058097 | leaf | rice_mock | 1.16 | MC |
| SRR7058098 | leaf | rice_RSV | 1.65 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.18 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.25 | MC |
| SRR1061625 | panicle | Heat Stress | 1.14 | MC |
| SRR1061624 | panicle | Normal | 1.04 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.91 | MC |
| SRR1061622 | flag_leaf | Normal | 0.54 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 0.29 | MC |
| SRR1061620 | flag_leaf | Normal | 0.53 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 1.58 | MC |
| SRR504363 | leaf | 93-11 X NPB | 8.10 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.21 | MC |
| SRR9070101 | shoot_base | WT_base | 0.17 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 0.55 | MC |
| SRR089619 | panicle | control | 0.33 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.36 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 3.62 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 2.66 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 1.79 | MC |
| SRR6498701 | leaf | "WT, Control" | 1.55 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 0.97 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 0.91 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 1.92 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 0.38 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.35 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 0.30 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.82 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.51 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 2.28 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 1.89 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 2.12 | MC |
| SRR1849773 | leaf | Control 120min | 1.65 | MC |
| SRR1849771 | leaf | Control 120min | 1.47 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 2.64 | MC |
| SRR7058096 | leaf | rice_mock | 2.23 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.16 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 0.19 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.52 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.91 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 0.94 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.62 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 2.26 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.29 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 1.45 | MC |
| SRR4098208 | root | No treatment | 0.27 | MC |
| SRR4098209 | leaf | No treatment | 0.32 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.60 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.77 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.72 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.16 | MC |
| SRR2862364 | leaf | mock leaf cells | 2.46 | MC |
| SRR2862365 | leaf | mock leaf cells | 2.12 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 33.48 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 0.48 | MC |
| SRR2862363 | leaf | mock leaf cells | 28.04 | MC |
| SRR8649147 | panicle | panicle tissue | 0.71 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 0.61 | MC |
| SRR6498699 | leaf | "WT, Control" | 2.13 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 2.15 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.90 | MC |
| SRR2646852 | panicle | FP | 0.28 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.49 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.53 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 0.69 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.26 | MC |
| SRR6365690 | seedling | Wild type | 0.35 | MC |
| SRR6365693 | panicle | Wild type | 0.50 | MC |
| SRR6365694 | panicle | Wild type | 0.78 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 1.19 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1.04 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 0.15 | MC |
| SRR6810101 | seedling | seedling | 1.46 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 0.81 | MC |
| SRR1849784 | root | Control 120min | 0.52 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.25 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.32 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 0.74 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.40 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.19 | MC |
| SRR3110556 | shoot | shoot control | 0.70 | MC |
| SRR1061616 | panicle | Normal | 0.24 | MC |
| SRR1061617 | panicle | Heat Stress | 0.81 | MC |
| SRR1061614 | panicle | Normal | 0.57 | MC |
| SRR1061615 | panicle | Heat Stress | 0.34 | MC |
| SRR1061612 | panicle | Normal | 0.92 | MC |
| SRR1061613 | panicle | Heat Stress | 0.47 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 0.58 | MC |
| SRR1061618 | flag_leaf | Normal | 0.57 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 0.87 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.35 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.30 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.58 | MC |
| SRR504360 | leaf | Nipponbare | 20.97 | MC |
| SRR504361 | leaf | Nov-93 | 0.66 | MC |
| SRR4098172 | seedling | Cold (4C) | 0.48 | MC |
| SRR6810102 | seedling | seedling | 1.26 | MC |
| SRR10956502 | panicle | WT | 0.96 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 1.99 | MC |
| SRR10956501 | panicle | WT | 0.66 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 0.90 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 0.44 | MC |
| SRR1740023 | seedling | IR64-Control | 0.82 | MC |
| SRR1740024 | seedling | N22-Control | 0.64 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 1.75 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 1.91 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.59 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.68 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.30 | MC |
| SRR1654490 | leaf | wild type | 1.39 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.24 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.28 | MC |
| SRR504362 | leaf | NPB X 93-11 | 8.47 | MC |