RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR5820	miRbase		Chr10	13982658	13982678	+	N/Y
osa-miR5821	miRbase		Chr12	24605434	24605454	+	N/N
osa-miR5822	miRbase		Chr11	26335946	26335966	+	N/N
Osa-miR5823	miRbase/PmiREN	/	Chr11	21506687	21506712	-	N/N
osa-miR5824	miRbase		Chr1	1761540	1761563	-	Y/N
osa-miR1319b	miRbase		Chr3	23399924	23399947	+	N/N
Osa-miR5825	miRbase/PmiREN	/	Chr5	23591566	23591591	-	Y/N
osa-miR5826	miRbase		Chr11	12859207	12859230	+	N/N
Osa-miR5827	miRbase/PmiREN	/	Chr4	30082047	30082067	-	N/N
Osa-miR5828	miRbase/PmiREN	/	Chr6	16015701	16015721	+	N/N
osa-miR5829	miRbase		Chr6	20149377	20149400	+	N/N
osa-miR5830	miRbase		Chr1	4352598	4352621	-	Y/N
osa-miR5831	miRbase		Chr5	28577946	28577969	+	Y/N
Osa-miR5179	miRbase/PmiREN	/	Chr2	12450920	12450940	+	Y/N
osa-miR5832	miRbase		Chr12	21169058	21169078	+	N/N
Osa-miR5833	miRbase/PmiREN	/	Chr5	9382713	9382735	+	N/N
Osa-miR5834	miRbase/PmiREN	/	Chr6	4758671	4758691	-	N/N
Osa-miR5835	miRbase/PmiREN	/	Chr6	19306937	19306962	-	N/N
osa-miR2873c	miRbase		Chr7	27503533	27503553	+	N/N
osa-miR5836	miRbase		Chr6	17701925	17701945	-	N/Y
osa-miR5837.2	miRbase		Chr11	24702182	24702202	-	N/N
osa-miR5837.1	miRbase		Chr11	24702161	24702181	-	N/Y
Osa-miR5516b	miRbase/PmiREN	/	Chr5	13962669	13962689	-	N/Y
osa-miR6245	miRbase		Chr2	16647884	16647904	+	N/N
osa-miR1440b	miRbase		Chr9	5980663	5980683	+	N/N
osa-miR6246	miRbase		Chr3	1625448	1625470	+	Y/N
Osa-miR6247	miRbase/PmiREN	/	Chr7	19977427	19977449	-	N/N
osa-miR6248	miRbase		Chr3	32572995	32573015	-	Y/N
osa-miR5337b	miRbase		Chr3	35885491	35885511	-	N/N
osa-miR6249a	miRbase		Chr3	744670	744690	-	Y/N
osa-miR5512b	miRbase		Chr4	18386989	18387009	-	Y/N
osa-miR6250	miRbase		Chr6	28264709	28264730	+	N/N
Osa-miR6251	miRbase/PmiREN	/	Chr9	15792347	15792367	+	N/N
osa-miR6252	miRbase		Chr12	18110554	18110576	-	N/N
osa-miR6253	miRbase		Chr7	25019061	25019082	-	N/N
osa-miR6254	miRbase		Chr12	1970872	1970892	+	N/N
osa-miR6255	miRbase		Chr7	25018839	25018860	-	N/N
Osa-miR6256	miRbase/PmiREN	/	Chr3	1235636	1235659	-	N/N
osa-miR818f	miRbase		Chr8	18746593	18746613	-	N/N
osa-miR1437b-5p	miRbase		Chr8	3956058	3956078	-	N/N
osa-miR1437b-3p	miRbase		Chr8	3955932	3955955	-	Y/N
osa-miR7692-5p	miRbase		Chr1	26250210	26250233	+	N/N
osa-miR7692-3p	miRbase		Chr1	26250474	26250497	+	Y/N
osa-miR7693-5p	miRbase		Chr12	25875300	25875323	-	N/N
osa-miR7693-3p	miRbase		Chr12	25875198	25875219	-	Y/N
osa-miR7694-5p	miRbase		Chr10	18864452	18864475	-	N/N
osa-miR7694-3p	miRbase		Chr10	18864382	18864403	-	Y/N
osa-miR7695-5p	miRbase		Chr1	11667043	11667066	-	Y/N
osa-miR7695-3p	miRbase		Chr1	11666852	11666872	-	Y/Y
osa-miR1861o	miRbase		ChrUn	521065	521086	+	Y/N
osa-miR5079b	miRbase		Chr10	10916069	10916090	-	N/N
osa-miR5539b	miRbase		Chr12	20553832	20553853	-	N/N
osa-miR6249b	miRbase		Chr4	30286469	30286489	+	Y/N
osa-miR531c	miRbase		Chr11	26930692	26930715	+	Y/N
osa-miR11336-5p	miRbase		Chr1	35090297	35090320	+	Y/N
osa-miR11336-3p	miRbase		Chr1	35090379	35090403	+	N/N
osa-miR11337-5p	miRbase		Chr2	27593846	27593866	+	N/N
osa-miR11337-3p	miRbase		Chr2	27593919	27593939	+	Y/N
osa-miR11338-5p	miRbase		Chr2	34890514	34890537	+	N/N
osa-miR11338-3p	miRbase		Chr2	34890601	34890624	+	Y/N
osa-miR11339-5p	miRbase		Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase		Chr1	10371868	10371888	+	N/N
osa-miR11340-5p	miRbase		Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase		Chr6	7715459	7715482	+	Y/N
osa-miR11341-5p	miRbase		Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase		Chr9	22895229	22895252	+	Y/N
osa-miR11342-5p	miRbase		Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase		Chr11	23289311	23289332	-	N/N
osa-miR11343-5p	miRbase		Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase		Chr12	16169071	16169091	-	N/N
osa-miR11344-5p	miRbase		Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase		Chr10	21166714	21166734	+	N/N
osa-miR2120b-5p	miRbase		Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase		Chr1	1830288	1830307	+	N/N
osa-miR5801c-5p	miRbase		Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase		Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase		Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase		Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN		Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN		Chr6	28489798	28489818	+	Y/Y
Osa-miRN2228b	PmiREN		Chr8	4435491	4435511	-	N/Y
Osa-miRN2232d	PmiREN		Chr9	6711930	6711950	-	Y/N
Osa-miRN2232e	PmiREN		Chr1	26307378	26307398	+	Y/N
Osa-miRN2232b	PmiREN		Chr6	8837476	8837496	+	Y/N
Osa-miRN2232c	PmiREN		Chr7	24306549	24306569	-	Y/N
Osa-miR11340	PmiREN		Chr6	7715339	7715361	+	N/N
Osa-miR2871	PmiREN		Chr4	8340904	8340924	+	Y/N
Osa-miRN2232j	PmiREN		Chr12	25611723	25611743	+	Y/N
Osa-miR2876	PmiREN		Chr6	17008984	17009005	-	Y/N
Osa-miRN2203b	PmiREN		Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN		Chr1	25180654	25180674	+	Y/N
Osa-miR3979	PmiREN		Chr11	19480162	19480182	+	Y/Y
Osa-miRN2309c	PmiREN		Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN		Chr10	20405654	20405674	-	N/Y
Osa-miRN2309a	PmiREN		Chr7	29070631	29070652	+	Y/N
Osa-miRN2332	PmiREN		Chr9	8961276	8961296	-	N/N
Osa-miRN2354	PmiREN		Chr12	24297192	24297212	+	Y/N
Osa-miRN2355	PmiREN		Chr1	20077203	20077223	+	N/N
Osa-miRN2356	PmiREN		Chr2	20358270	20358290	-	N/N
Osa-miR1846h	PmiREN		Chr2	26544128	26544147	-	Y/N
Osa-miR818b	PmiREN		Chr2	4007276	4007301	+	N/N
Osa-miRN2351	PmiREN		Chr12	24395829	24395849	-	N/Y
Osa-miRN2352	PmiREN		Chr12	18628386	18628406	-	N/N
Osa-miR818a	PmiREN		Chr2	28768227	28768250	+	Y/N
Osa-miR1846g	PmiREN		Chr11	21603039	21603059	-	Y/Y
Osa-miR1846f	PmiREN		Chr10	6857378	6857397	-	Y/N
Osa-miR1846e	PmiREN		Chr9	13211472	13211495	-	Y/N
Osa-miR11337l	PmiREN		Chr4	14006148	14006168	+	N/N
Osa-miR2118l	PmiREN		Chr11	7810747	7810768	-	Y/Y
Osa-miR2118i	PmiREN		Chr11	7810261	7810282	-	Y/N