RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
Osa-miRN2293	PmiREN	Chr4	18680363	18680382	-	N/Y
Osa-miR5152b	PmiREN	Chr5	29148351	29148371	+	N/N
Osa-miR482	PmiREN	Chr4	21654404	21654425	-	Y/Y
Osa-miR812ai	PmiREN	Chr12	24677388	24677411	+	Y/N
Osa-miRN2299	PmiREN	Chr12	21011265	21011285	-	N/Y
Osa-miRN2336	PmiREN	Chr12	16207990	16208010	+	N/Y
Osa-miRN2334	PmiREN	Chr10	3705965	3705985	+	N/N
Osa-miR812ar	PmiREN	Chr10	19333224	19333243	+	Y/N
Osa-miRN2173	PmiREN	Chr7	16257970	16257990	+	N/N
Osa-miR531e	PmiREN	Chr5	8564911	8564932	-	Y/N
Osa-miR812ap	PmiREN	Chr7	16750018	16750039	-	Y/N
Osa-miR812aq	PmiREN	Chr1	27167165	27167186	+	Y/N
Osa-miR1430	PmiREN	Chr12	6825111	6825133	-	Y/N
Osa-miR1432	PmiREN	Chr7	23401783	23401804	-	Y/Y
Osa-miR5837	PmiREN	Chr11	24702182	24702202	-	N/N
Osa-miRN2260b	PmiREN	Chr6	27970697	27970717	-	N/Y
Osa-miR5831	PmiREN	Chr5	28577938	28577960	+	Y/N
Osa-miR5809b	PmiREN	Chr4	23527612	23527633	-	N/N
Osa-miR5537a	PmiREN	Chr10	11112761	11112782	+	N/N
Osa-miR5537b	PmiREN	Chr11	19389088	19389109	+	N/N
Osa-miR5537c	PmiREN	Chr6	3109261	3109282	-	N/N
Osa-miRN2276b	PmiREN	Chr2	23015418	23015438	-	Y/N
Osa-miRN2276c	PmiREN	Chr4	34592807	34592827	-	Y/N
Osa-miRN2276a	PmiREN	Chr11	149510	149530	-	Y/N
Osa-miRN2285b	PmiREN	Chr10	3019375	3019394	-	Y/Y
Osa-miR11339j	PmiREN	Chr3	11025951	11025972	-	N/N
Osa-miRN2285c	PmiREN	Chr11	21857897	21857916	+	Y/Y
Osa-miR11339i	PmiREN	Chr12	22138563	22138586	+	N/N
Osa-miR821	PmiREN	Chr8	19925167	19925189	-	N/N
Osa-miR530	PmiREN	Chr4	8303664	8303684	-	Y/Y
Osa-miRN2237a	PmiREN	Chr4	9137284	9137303	-	Y/N
Osa-miRN2237c	PmiREN	Chr8	22325694	22325715	+	Y/N
Osa-miRN2237b	PmiREN	Chr10	10807210	10807231	-	Y/N
Osa-miRN2294	PmiREN	Chr9	9174506	9174526	+	N/Y
Osa-miRN2291	PmiREN	Chr9	8969545	8969565	+	Y/Y
Osa-miRN2290	PmiREN	Chr8	10061176	10061196	-	N/Y
Osa-miRN2205	PmiREN	Chr5	3877018	3877038	+	Y/N
Osa-miRN2292	PmiREN	Chr11	9840141	9840161	+	N/N
Osa-miR9777	PmiREN	Chr2	1797977	1797998	-	Y/N
Osa-miRN2369	PmiREN	Chr12	14944232	14944252	+	N/Y
Osa-miRN2368	PmiREN	Chr11	23042124	23042144	-	N/N
Osa-miRN2365	PmiREN	Chr7	6687478	6687498	+	N/N
Osa-miRN2367	PmiREN	Chr7	5730366	5730386	+	N/N
Osa-miRN2366	PmiREN	Chr7	15967943	15967963	-	N/Y
Osa-miRN2361	PmiREN	Chr4	12965130	12965150	+	N/N
Osa-miRN2360	PmiREN	Chr4	17717355	17717375	+	N/N
Osa-miRN2363	PmiREN	Chr6	24709936	24709956	+	N/Y
Osa-miRN2362	PmiREN	Chr5	24797708	24797728	+	Y/N
Osa-miRN2285d	PmiREN	Chr11	6974869	6974888	-	Y/Y
Osa-miRN2285e	PmiREN	Chr4	598059	598078	+	Y/Y
Osa-miRN2285f	PmiREN	Chr6	23376294	23376313	-	Y/Y
Osa-miRN2285a	PmiREN	Chr10	17481035	17481054	+	Y/Y
Osa-miR5536	PmiREN	Chr2	19457533	19457553	+	N/N
Osa-miRN2228a	PmiREN	Chr4	4926830	4926850	-	N/Y
Osa-miRN2281a	PmiREN	Chr4	16545760	16545780	+	Y/N
Osa-miRN2229b	PmiREN	Chr8	26953695	26953715	-	Y/Y
Osa-miRN2229c	PmiREN	Chr8	705385	705405	+	Y/Y
Osa-miRN2229a	PmiREN	Chr5	7377922	7377942	-	Y/Y
Osa-miRN2281b	PmiREN	Chr8	3513112	3513132	+	Y/N
Osa-miRN2318	PmiREN	Chr12	7555497	7555517	+	N/N
Osa-miRN01	RiceNCexp	Chr1	2068759	2068778	-	N/N
Osa-miRN02	RiceNCexp	Chr1	2309154	2309173	-	Y/N
Osa-miRN03	RiceNCexp	Chr1	2309230	2309250	-	Y/Y
Osa-miRN04	RiceNCexp	Chr1	4766346	4766366	-	Y/N
Osa-miRN05	RiceNCexp	Chr1	4766347	4766367	-	Y/N
Osa-miRN06	RiceNCexp	Chr1	4766354	4766373	-	N/N
Osa-miRN07	RiceNCexp	Chr1	4766362	4766382	-	N/N
Osa-miRN08	RiceNCexp	Chr1	4766513	4766533	-	N/N
Osa-miRN09	RiceNCexp	Chr1	11666844	11666864	-	Y/Y
Osa-miRN10	RiceNCexp	Chr1	11667021	11667041	-	N/N
Osa-miRN11	RiceNCexp	Chr1	11667043	11667064	-	N/N
Osa-miRN12	RiceNCexp	Chr1	11667044	11667064	-	N/N
Osa-miRN13	RiceNCexp	Chr1	12301814	12301833	+	Y/N