RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 194

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
Osa-miR156a	miRbase/PmiREN	/	Chr1	22524221	22524240	-	Y/Y
Osa-miR156b	miRbase/PmiREN	/	Chr1	4666383	4666402	+	Y/Y
osa-miR156b-3p	miRbase		Chr1	4666450	4666470	+	Y/Y
Osa-miR156c	miRbase/PmiREN	/	Chr1	4666003	4666022	+	Y/Y
osa-miR156c-3p	miRbase		Chr1	4666074	4666095	+	Y/Y
osa-miR156d	miRbase		Chr2	4512974	4512993	-	Y/Y
Osa-miR156e	miRbase/PmiREN	/	Chr4	25026402	25026421	-	Y/Y
osa-miR156f-5p	miRbase		Chr8	21478233	21478252	+	Y/Y
Osa-miR156g	miRbase/PmiREN	/	Chr9	15065256	15065275	+	Y/Y
osa-miR156g-3p	miRbase		Chr9	15065346	15065367	+	Y/Y
osa-miR156h-5p	miRbase		Chr8	21491235	21491254	+	Y/Y
Osa-miR156i	miRbase/PmiREN	/	Chr2	24120063	24120082	-	Y/Y
osa-miR156j-5p	miRbase		Chr6	26554836	26554855	+	Y/Y
osa-miR160c-3p	miRbase		Chr8	1707642	1707662	+	Y/Y
osa-miR166a-5p	miRbase		Chr10	19987156	19987176	+	Y/Y
osa-miR166b-5p	miRbase		Chr6	30327248	30327268	-	Y/Y
osa-miR166c-5p	miRbase		Chr3	3487799	3487818	+	Y/Y
Osa-miR166e	miRbase/PmiREN	/	Chr3	765735	765755	+	Y/Y
osa-miR167c-3p	miRbase		Chr3	33130741	33130763	+	Y/Y
osa-miR169a	miRbase		Chr1	8729141	8729161	+	Y/Y
Osa-miR393a	miRbase/PmiREN	/	Chr1	2309233	2309253	-	Y/Y
Osa-miR396a	miRbase/PmiREN	/	Chr2	34280394	34280414	+	Y/Y
osa-miR396a-3p	miRbase		Chr2	34280509	34280528	+	Y/Y
Osa-miR396b	miRbase/PmiREN	/	Chr6	3669659	3669679	+	Y/Y
osa-miR396b-3p	miRbase		Chr6	3669736	3669755	+	Y/Y
osa-miR397a	miRbase		Chr6	28489795	28489815	+	Y/Y
osa-miR397b	miRbase		Chr2	3280868	3280888	-	Y/Y
osa-miR398b	miRbase		Chr7	14598627	14598647	-	Y/Y
Osa-miR399a	miRbase/PmiREN	/	Chr1	30478754	30478774	+	Y/Y
Osa-miR399b	miRbase/PmiREN	/	Chr2	7664036	7664056	-	Y/Y
Osa-miR399c	miRbase/PmiREN	/	Chr5	26305948	26305968	-	Y/Y
Osa-miR399k	miRbase/PmiREN	/	Chr5	26311328	26311348	+	Y/Y
Osa-miR156l	miRbase/PmiREN	/	Chr5	5230619	5230639	+	Y/Y
osa-miR159c	miRbase		Chr1	6556058	6556078	-	Y/Y
osa-miR159d	miRbase		Chr1	6563766	6563786	-	Y/Y
osa-miR159e	miRbase		Chr1	9760718	9760738	-	Y/Y
Osa-miR164e	miRbase/PmiREN	/	Chr3	10542167	10542187	+	Y/Y
osa-miR167d-3p	miRbase		Chr7	4166303	4166324	-	Y/Y
osa-miR169f.2	miRbase		Chr2	18558482	18558502	-	Y/Y
Osa-miR169h	miRbase/PmiREN	/	Chr8	26807359	26807379	+	Y/Y
osa-miR169i-5p.2	miRbase		Chr8	26803136	26803157	+	Y/Y
Osa-miR169i	miRbase/PmiREN	/	Chr8	26803159	26803179	+	Y/Y
Osa-miR169j	miRbase/PmiREN	/	Chr9	19788871	19788891	+	Y/Y
Osa-miR169k	miRbase/PmiREN	/	Chr9	19792143	19792163	+	Y/Y
Osa-miR169l	miRbase/PmiREN	/	Chr8	26817498	26817518	+	Y/Y
Osa-miR169m	miRbase/PmiREN	/	Chr8	26813907	26813927	+	Y/Y
Osa-miR169n	miRbase/PmiREN	/	Chr11	6085398	6085418	-	Y/Y
Osa-miR169o	miRbase/PmiREN	/	Chr11	6081670	6081690	-	Y/Y
osa-miR171d-5p	miRbase		Chr10	21237325	21237345	+	Y/Y
osa-miR171f-5p	miRbase		Chr3	30027786	30027806	+	Y/Y