Chr:
Chr3
Start:
765735
End:
765755
Strand:
+
Sequence:
GGAAUGUUGUCUGGUUCAAGG
Length:
21
precursor sequence:
GGAAGCUAUUGUUUCUGGGUGGAAUGUUGUCUGGUUCAAGGCCCCUUAGGAUGUGUGAUUUUUGAUGGUUUAUGCAUUCAUCUUGAUGCGAACAUCUAUCUCGGAUCUUUGGGUUCUCGAACCAGGCUUCAUUCCCCUCAGAGAUAGCUUUUCCAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
16
NEP:
5.84%
LE_num:
LEP:
8.76%
ME_num:
MEP:
48.54%
HE_num:
HEP:
36.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.94
Avg Expression:
272.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -2.38476507517886 | 0.0448929002122257 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -3.77823047309253 | 3.44487610256269e-05 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.34381705581339 | 2.02640184027235e-05 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -1.75702195877641 | 0.00262892677119398 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.15599516636438 | 0.0130940294040431 |
| 6 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.21560695302645 | 0.0116257456285411 |
| 7 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -2.07735889081794 | 0.000606131783631425 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -2.79827564550221 | 1.06308030914654e-22 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -4.92185538047774 | 1.35982176016507e-21 |
| 10 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -4.11096100887028 | 3.24121739722801e-23 |
| 11 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.59586034436063 | 0.000399192936624485 |
| 12 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 2.43083626681483 | 3.1621190348863e-05 |