Chr:
Chr5
Start:
5230619
End:
5230639
Strand:
+
Sequence:
CGACAGAAGAGAGUGAGCAUA
Length:
21
precursor sequence:
GAACAAAAGAGCUAGGGAGCCGACAGAAGAGAGUGAGCAUAUAUAGUUCUUUCCUUGCAUAUGUGGUCAUAUGUGUGUUGACUGAAGAGAUACAUAUAUAUAGAGAGAGAGAGUUCAUGUGCUUGAAGCUAUAUGUGCUCACUUCUCUUUCUGUCAGCAAAUUAUCUCCCUCCCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
53
NEP:
19.34%
LE_num:
LEP:
14.23%
ME_num:
MEP:
58.76%
HE_num:
HEP:
7.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.98
Avg Expression:
196.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -5.94052248858091 | 0.0240738180331201 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 2.49785894523162 | 8.8442824536318e-07 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 4.64382264760618 | 6.51275136825884e-23 |