Chr:
Chr1
Start:
6563766
End:
6563786
Strand:
-
Sequence:
AUUGGAUUGAAGGGAGCUCCG
Length:
21
precursor sequence:
UGAUGUGAGGAGGAGCUCCUUUCGAUCCAAUUCAGGAGAGGAAGUGGUGGGAUGCAGCUGCCGGUUCAUGGAUACCUCUGCAGUUCAUGCCGGUAGGCCUGCACUUGCAUGGGUUUGCAUGACCUGGGAGAUGAACCUGCCAUUGUGUUCCUCUAUUGAUUGGAUUGAAGGGAGCUCCGGCUACACCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
25
NEP:
9.12%
LE_num:
LEP:
16.06%
ME_num:
MEP:
63.87%
HE_num:
HEP:
10.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.95
Avg Expression:
49.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.04274293878133 | 0.00835837836113997 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.09513622958486 | 0.0143203707331242 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.40108029733498 | 1.44331901190877e-15 |
| 4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.05640590149563 | 6.53148343694547e-06 |
| 5 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.19129252019315 | 0.000129005131007713 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 3.53360518044419 | 1.25796370756923e-08 |