Chr:
Chr1
Start:
6556058
End:
6556078
Strand:
-
Sequence:
AUUGGAUUGAAGGGAGCUCCA
Length:
21
precursor sequence:
GAGGAGGAAGAGGAGCUCCUUUCGAUCCAAUUCAGGAGAGGAAGUGGUAGGAUGCAGCUGCCGAUUCAUGGAUACCUCUGGAGUGCAUGGCAGCAAUGCUGUAGGCCUGCACUUGCAUGGGUUUGCAUGACCCGGGAGAUGAACCCACCAUUGUCUUCCUCUAUUGAUUGGAUUGAAGGGAGCUCCACAUCUCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
25
NEP:
9.12%
LE_num:
LEP:
16.06%
ME_num:
MEP:
63.87%
HE_num:
HEP:
10.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.95
Avg Expression:
49.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.04274293878133 | 0.00835837836113997 |
2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.09513622958486 | 0.0143203707331242 |
3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.39804401116027 | 1.78099102268059e-15 |
4 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.05347624412614 | 6.59946361951581e-06 |
5 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.15671770948163 | 0.000225850643457497 |
6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 3.53360518044419 | 1.25796370756923e-08 |