Chr:
Chr9
Start:
15065346
End:
15065367
Strand:
+
Sequence:
GCUCACUUCUCUCUCUGUCAGC
Length:
22
precursor sequence:
GGCUGACAGAAGAGAGUGAGCACACAGCGGGCAGACUGCAUCUGAAUUACCUGUUGCGACGAAGAAGACGACGGACGCAGCUUGCCGUUGCGUGCUCACUUCUCUCUCUGUCAGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
27
NEP:
9.85%
LE_num:
LEP:
7.3%
ME_num:
MEP:
51.09%
HE_num:
HEP:
31.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.96
Avg Expression:
810.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.02866003526296 | 5.60795683068232e-15 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.24882060084225 | 3.01598232845166e-22 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 1.28000993166329 | 0.00839653938596827 |