Chr:
Chr2
Start:
18558482
End:
18558502
Strand:
-
Sequence:
UGAGGACAAGAGCUGAUUCGG
Length:
21
precursor sequence:
GGGCCUUCCAUGAGGACAAGAGCUGAUUCGGUAGCCAAGGAUGACUUGCCUAAUGCCUAUGUGCAUGUGUUUAUACGCUGCUCAUCUGCAUUUUGAUUAUCCCCUGAUCAGUCCUGUCGUCAAUUAUAUGUGUGUGUAGUACUCUGUACUCAUACAUAUAUAGGCAUGUCUUCCUUGGCUAUUCGGAGCGGCUCUUGUCUCUCGUGGAAGGCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
67
NEP:
24.45%
LE_num:
LEP:
13.87%
ME_num:
MEP:
58.03%
HE_num:
HEP:
3.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.92
Avg Expression:
15.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 8.98845509627947 | 2.73655650319607e-08 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 7.43292378514643 | 2.44471132800596e-05 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 5.84084288628718 | 0.00176868936371608 |
| 4 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.97908694145668 | 0.000374606045260301 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.43794909068574 | 0.00130894308780002 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.08299375566989 | 0.0246068488678425 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.16177029066765 | 0.032902413214463 |