Chr:
Chr11
Start:
6085398
End:
6085418
Strand:
-
Sequence:
UAGCCAAGAAUGACUUGCCUA
Length:
21
precursor sequence:
GGAGAGGCUACUCCCUUUGGUAGCCAAGAAUGACUUGCCUAUGUGUUUUGCCUUGUGUUGGCUCAUCCAUCCAUCUAUCAGCCGUUGCAGAUUUGCAGUGGCAGAUUAAAGGGUUUCAGAAAGAAAUUCUUGUGAUGGAUGUGCAAUGUGGCUGCAUGGGCCGGUCUUCUUGGCUAGCCAGAGUGGCUCUCAUCCACCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
34
NEP:
12.41%
LE_num:
LEP:
12.77%
ME_num:
MEP:
68.98%
HE_num:
HEP:
5.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.91
Avg Expression:
24.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.2888813365079 | 0.00261905471544327 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.49836948121377 | 0.000364976016883436 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -1.40269851627089 | 0.0249785060111632 |