Chr:
Chr10
Start:
19987156
End:
19987176
Strand:
+
Sequence:
GGAAUGUUGUCUGGUUCAAGG
Length:
21
precursor sequence:
UGAAGCUAUUUGCUUCUGAGUGGAAUGUUGUCUGGUUCAAGGUCUCAUGCACCUUGCGGUUUUGAGGAUGAUUUGUGCAAGGUUUUUCAUUCCUCUCAUCCGUGGGAUCUCGGACCAGGCUUCAUUCCCCUCAGAGAUAGCUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
8
NEP:
2.92%
LE_num:
LEP:
7.3%
ME_num:
MEP:
52.55%
HE_num:
HEP:
37.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.94
Avg Expression:
273.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -2.42031853225676 | 0.0392900871785162 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -3.78334531399232 | 3.44487610256269e-05 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.13770502379417 | 0.000100423899625144 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -1.7364918262352 | 0.00303531990618714 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.20645192197585 | 0.00925605676251092 |
| 6 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.2357982887805 | 0.0086777341689196 |
| 7 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.63876344199799 | 0.00489162775905331 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -2.80708249742509 | 7.13085114036799e-23 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -4.93054757661091 | 1.1812127804046e-21 |
| 10 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -4.18257716896768 | 2.42151499686849e-23 |
| 11 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.59586034436063 | 0.000399192936624485 |
| 12 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 2.3917043735614 | 3.12433050840316e-05 |