Chr:
Chr3
Start:
30027786
End:
30027806
Strand:
+
Sequence:
UGUUGGCAUGGUUCAAUCAAA
Length:
21
precursor sequence:
GGGAGAGUGCGAUGUUGGCAUGGUUCAAUCAAACCGGGCAAACUUAUGCACUAGCUAAGCAAGAUGCAGGGAUAUGCAGUAUGGUUUUGUUUGGUCUGAUUGAGCCGUGCCAAUAUCACAAGCUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
71
NEP:
25.91%
LE_num:
LEP:
15.69%
ME_num:
MEP:
49.64%
HE_num:
HEP:
8.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.95
Avg Expression:
51.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 4.59478605318952 | 8.54175325947205e-09 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 3.75254684906725 | 3.645764958567e-06 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.63362914646721 | 3.9728745703119e-05 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3.63889889853523 | 1.34710695252936e-05 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 6.06101306749175 | 0.00011546777506068 |