Chr:
Chr3
Start:
10542167
End:
10542187
Strand:
+
Sequence:
UGGAGAAGCAGGGCACGUGAG
Length:
21
precursor sequence:
GUUGGUGUACUUGUGCAGGGUGGAGAAGCAGGGCACGUGAGCGGCCAUCCAGUGUAGCUUCGCUGCGCGUCCAUGGCGGCGAACGCGCGUGAUCUGGAGUUUGGAUGGUCGUUCAUGUGUCCGUCUUCUCCACCGAGCACUGGCAUAUCCAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
54
NEP:
19.71%
LE_num:
LEP:
10.58%
ME_num:
MEP:
49.27%
HE_num:
HEP:
20.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.96
Avg Expression:
420.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -3.17087443551608 | 0.0191880505116035 |
| 2 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 2.7201054624963 | 0.00128563737645011 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.7402733857328 | 0.00488454215901515 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.04903798173908 | 0.00248844592108015 |
| 5 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.04317409941423 | 9.73216742379971e-08 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.10943609975268 | 5.84884372315451e-08 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.15559515710981 | 1.72827297147779e-05 |