Chr:
Chr5
Start:
26311328
End:
26311348
Strand:
+
Sequence:
UGCCAAAGGAAAUUUGCCCCG
Length:
21
precursor sequence:
AGAUGUGCAGCUGCAUUGCUGGGCAAGUUGUCCUUUGGCAGAUGUUGCAGUUCAUCAUCGAUGCCUGGGGGUUACCAGACUACUGCCAAAGGAAAUUUGCCCCGGAAUUCAUCUGCACAAACAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
129
NEP:
47.08%
LE_num:
LEP:
23.72%
ME_num:
MEP:
28.47%
HE_num:
HEP:
0.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
10.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -10.920736218859 | 1.32479812297921e-12 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -9.53519439769866 | 9.77781172191799e-10 |