Chr:
Chr1
Start:
8729141
End:
8729161
Strand:
+
Sequence:
CAGCCAAGGAUGACUUGCCGA
Length:
21
precursor sequence:
CGCCGGCGGCCUGACAUUGGGAUCGGAGGCCAUGGUGCAGCCAAGGAUGACUUGCCGAUCGAUCGAUCUAUCUAUGAAGCUAAGCUAGCUGGCCAUGGAUCCAUCCAUCAAUUGGCAAGUUGUUCUUGGCUACAUCUUGGCCCCUGCUCCUCAUGUAAGGCCGGCCUGUGGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
14
NEP:
5.11%
LE_num:
LEP:
5.47%
ME_num:
MEP:
64.6%
HE_num:
HEP:
24.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
293.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 2.41164056065351 | 0.0295922619060415 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.62341683598621 | 0.00151848755109588 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.93692240083238 | 0.00155391353237125 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.96813370097247 | 0.0002792249032184 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.15302167133168 | 0.0417213680354973 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.2393246535895 | 0.0209168327557953 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 2.75172937226149 | 8.64262781625064e-45 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 2.55033149472701 | 5.23837319589744e-36 |