Chr:
Chr3
Start:
3487799
End:
3487818
Strand:
+
Sequence:
GGAAUGUUGUCUGGUCCGAG
Length:
20
precursor sequence:
GGCAGUUGAGGGGAAUGUUGUCUGGUCCGAGACCUAACACCGGGCGGAAUGGCGGAUUCAGCUGCAGCUAAGCAAGCUAGGUGGGGGGUUUCGGACCAGGCUUCAUUCCCCCCAACUCAACUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
20
NEP:
7.3%
LE_num:
LEP:
10.22%
ME_num:
MEP:
67.88%
HE_num:
HEP:
14.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.94
Avg Expression:
86.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.14176799134714 | 0.000201554594519468 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 1.67165904723363 | 0.0434837590336906 |