RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR160f-3p	miRbase		Chr8	24396953	24396973	+	Y/N
Osa-miR162b	miRbase/PmiREN	/	Chr4	24406002	24406022	+	Y/N
Osa-miR164c	miRbase/PmiREN	/	Chr5	17327450	17327470	+	Y/N
osa-miR164d	miRbase		Chr2	33143630	33143650	-	Y/N
Osa-miR164e	miRbase/PmiREN	/	Chr3	10542167	10542187	+	Y/Y
osa-miR166k-5p	miRbase		Chr2	32435097	32435117	-	Y/N
Osa-miR166k	miRbase/PmiREN	/	Chr2	32435013	32435033	-	Y/N
osa-miR166l-5p	miRbase		Chr9	16951829	16951849	+	Y/N
Osa-miR166l	miRbase/PmiREN	/	Chr9	16951903	16951923	+	Y/N
osa-miR167d-5p	miRbase		Chr7	4166374	4166394	-	Y/N
osa-miR167d-3p	miRbase		Chr7	4166303	4166324	-	Y/Y
osa-miR167e-5p	miRbase		Chr2	3742483	3742503	-	Y/N
Osa-miR167e	miRbase/PmiREN	/	Chr2	3742249	3742269	-	Y/N
osa-miR167f	miRbase		Chr10	14723126	14723146	-	Y/N
osa-miR167g	miRbase		Chr3	3347692	3347712	+	Y/N
osa-miR167h-5p	miRbase		Chr12	25480628	25480648	+	Y/N
osa-miR167h-3p	miRbase		Chr12	25480709	25480729	+	Y/N
Osa-miR167i	miRbase/PmiREN	/	Chr6	27674759	27674779	+	Y/N
osa-miR167i-3p	miRbase		Chr6	27674921	27674941	+	Y/N
osa-miR168a-5p	miRbase		Chr2	1553210	1553230	-	Y/N
osa-miR168a-3p	miRbase		Chr2	1553162	1553185	-	Y/N
osa-miR168b	miRbase		Chr2	27336438	27336458	+	N/N
Osa-miR169b	miRbase/PmiREN	/	Chr6	27296005	27296025	-	Y/N
Osa-miR169c	miRbase/PmiREN	/	Chr4	30712419	30712439	-	Y/N
Osa-miR169d	miRbase/PmiREN	/	Chr9	14620454	14620474	-	N/N
Osa-miR169e	miRbase/PmiREN	/	Chr2	31205967	31205987	-	Y/N
osa-miR169f.2	miRbase		Chr2	18558482	18558502	-	Y/Y
osa-miR169f.1	miRbase		Chr2	18558461	18558481	-	Y/N
Osa-miR169g	miRbase/PmiREN	/	Chr4	19420087	19420107	+	Y/N
Osa-miR169h	miRbase/PmiREN	/	Chr8	26807359	26807379	+	Y/Y
osa-miR169i-5p.2	miRbase		Chr8	26803136	26803157	+	Y/Y
Osa-miR169i	miRbase/PmiREN	/	Chr8	26803159	26803179	+	Y/Y
osa-miR169i-3p	miRbase		Chr8	26803250	26803271	+	Y/N
Osa-miR169j	miRbase/PmiREN	/	Chr9	19788871	19788891	+	Y/Y
Osa-miR169k	miRbase/PmiREN	/	Chr9	19792143	19792163	+	Y/Y
Osa-miR169l	miRbase/PmiREN	/	Chr8	26817498	26817518	+	Y/Y
Osa-miR169m	miRbase/PmiREN	/	Chr8	26813907	26813927	+	Y/Y
Osa-miR169n	miRbase/PmiREN	/	Chr11	6085398	6085418	-	Y/Y
Osa-miR169o	miRbase/PmiREN	/	Chr11	6081670	6081690	-	Y/Y
osa-miR169p	miRbase		Chr8	7641421	7641442	-	Y/N
osa-miR169q	miRbase		Chr8	26817565	26817585	-	Y/N
Osa-miR171b	miRbase/PmiREN	/	Chr8	5369222	5369242	+	Y/N
osa-miR171c-5p	miRbase		Chr4	31713541	31713561	-	Y/N
Osa-miR171c	miRbase/PmiREN	/	Chr4	31713482	31713502	-	Y/N
osa-miR171d-5p	miRbase		Chr10	21237325	21237345	+	Y/Y
Osa-miR171d	miRbase/PmiREN	/	Chr10	21237417	21237437	+	Y/N
osa-miR171e-5p	miRbase		Chr3	1970499	1970519	+	Y/N
Osa-miR171e	miRbase/PmiREN	/	Chr3	1970575	1970595	+	Y/N
osa-miR171f-5p	miRbase		Chr3	30027786	30027806	+	Y/Y
Osa-miR171f	miRbase/PmiREN	/	Chr3	30027870	30027890	+	Y/N