RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR172b	miRbase		Chr1	42923746	42923766	-	Y/N
Osa-miR172c	miRbase/PmiREN	/	Chr7	13111495	13111515	-	N/N
osa-miR166g-5p	miRbase		Chr12	18329381	18329401	+	Y/N
Osa-miR166g	miRbase/PmiREN	/	Chr12	18329481	18329501	+	Y/N
osa-miR166h-5p	miRbase		Chr2	32435260	32435280	-	Y/Y
Osa-miR166h	miRbase/PmiREN	/	Chr2	32435184	32435204	-	Y/N
osa-miR166i-5p	miRbase		Chr3	25294967	25294987	+	N/N
osa-miR166i-3p	miRbase		Chr3	25295067	25295087	+	Y/N
osa-miR171h	miRbase		Chr4	28482509	28482529	+	Y/Y
osa-miR393b-5p	miRbase		Chr4	34931960	34931981	-	Y/Y
osa-miR393b-3p	miRbase		Chr4	34931885	34931905	-	Y/Y
osa-miR408-5p	miRbase		Chr1	12301691	12301711	+	Y/Y
Osa-miR408	miRbase/PmiREN	/	Chr1	12301813	12301833	+	Y/N
osa-miR172d-5p	miRbase		Chr2	35143626	35143645	-	Y/Y
Osa-miR172d	miRbase/PmiREN	/	Chr2	35143556	35143576	-	Y/N
osa-miR171i-5p	miRbase		Chr3	21191610	21191630	+	Y/N
osa-miR171i-3p	miRbase		Chr3	21191690	21191710	+	Y/N
osa-miR167j	miRbase		Chr1	32686182	32686202	-	Y/N
osa-miR166m	miRbase		Chr8	23045502	23045522	+	Y/Y
osa-miR166j-5p	miRbase		none	none	none	none	Y/N
osa-miR166j-3p	miRbase		none	none	none	none	Y/N
Osa-miR164f	miRbase/PmiREN	/	Chr5	23343931	23343951	+	Y/N
osa-miR413	miRbase		Chr12	10136385	10136405	+	N/N
osa-miR414	miRbase		Chr11	15504904	15504924	+	N/N
osa-miR415	miRbase		Chr12	26270580	26270600	-	N/N
osa-miR416	miRbase		Chr4	17456252	17456272	+	N/N
osa-miR417	miRbase		Chr8	14939896	14939916	+	N/N
osa-miR418	miRbase		Chr2	35182642	35182662	-	N/N
osa-miR419	miRbase		Chr12	8237586	8237606	-	N/N
osa-miR426	miRbase		Chr5	174012	174032	+	N/N
osa-miR435	miRbase		Chr3	18209546	18209565	+	Y/N
osa-miR437	miRbase		Chr2	17050374	17050394	-	N/N
osa-miR438	miRbase		Chr6	20745988	20746008	+	N/N
Osa-miR390	miRbase/PmiREN	/	Chr3	34275192	34275212	-	Y/N
osa-miR390-3p	miRbase		Chr3	34275156	34275175	-	Y/N
osa-miR439a	miRbase		Chr1	19880208	19880228	+	Y/N
osa-miR439b	miRbase		Chr10	5572957	5572977	+	Y/N
osa-miR439c	miRbase		Chr7	8233890	8233910	+	Y/N
osa-miR439d	miRbase		Chr3	13698381	13698401	+	Y/N
Osa-miR439e	miRbase/PmiREN	/	Chr10	15809263	15809285	-	N/N
osa-miR439f	miRbase		Chr9	16963092	16963112	+	Y/N
osa-miR439g	miRbase		Chr8	3664291	3664311	+	Y/N
osa-miR439h	miRbase		Chr6	1553126	1553146	-	Y/N
osa-miR439i	miRbase		none	none	none	none	N/N
Osa-miR440	miRbase/PmiREN	/	Chr11	9164827	9164850	-	Y/N
Osa-miR396e	miRbase/PmiREN	/	Chr4	34436832	34436852	+	Y/N
osa-miR396e-3p	miRbase		Chr4	34436971	34436994	+	Y/N
osa-miR443	miRbase		Chr3	30021486	30021507	+	N/N
osa-miR444a-5p	miRbase		none	none	none	none	Y/Y
Osa-miR444a	miRbase/PmiREN	/	Chr8	20895018	20895040	+	Y/N
osa-miR444a-3p.1	miRbase		none	none	none	none	N/N
Osa-miR528	miRbase/PmiREN	/	Chr3	1667330	1667350	+	Y/N
osa-miR528-3p	miRbase		Chr3	1667395	1667415	+	Y/N
osa-miR529a	miRbase		Chr2	16227884	16227903	+	Y/N
osa-miR530-5p	miRbase		Chr4	8303665	8303684	-	Y/Y
osa-miR530-3p	miRbase		Chr4	8303546	8303566	-	Y/Y
osa-miR531a	miRbase		Chr8	1220398	1220421	-	Y/N
Osa-miR535	miRbase/PmiREN	/	Chr11	16290598	16290618	-	Y/N
osa-miR535-3p	miRbase		Chr11	16290533	16290553	-	Y/N
osa-miR395m	miRbase		Chr4	32622092	32622112	+	Y/N
Osa-miR395n	miRbase/PmiREN	/	Chr4	32622288	32622308	+	Y/N
osa-miR395o	miRbase		Chr4	32622429	32622449	+	N/N
Osa-miR395p	miRbase/PmiREN	/	Chr4	32622572	32622592	+	Y/N
osa-miR395q	miRbase		Chr4	32622715	32622735	+	Y/N
osa-miR395v	miRbase		Chr9	6606575	6606595	-	N/N
osa-miR395w	miRbase		Chr9	6606291	6606312	-	N/N
osa-miR395r	miRbase		none	none	none	none	Y/N
osa-miR810a	miRbase		none	none	none	none	Y/N
osa-miR812a	miRbase		Chr1	33947325	33947346	+	N/N
osa-miR812b	miRbase		Chr2	1936332	1936353	-	N/N
osa-miR812c	miRbase		Chr6	26260440	26260461	+	N/N
osa-miR812d	miRbase		Chr7	22395351	22395372	+	N/N
osa-miR812e	miRbase		Chr8	16401286	16401307	+	N/N
osa-miR814a	miRbase		Chr1	22375048	22375069	+	Y/N
osa-miR814b	miRbase		Chr2	26341222	26341243	+	Y/N
osa-miR814c	miRbase		Chr2	10889722	10889743	-	Y/N