Chr:
Chr2
Start:
32435260
End:
32435280
Strand:
-
Sequence:
GGAAUGUUGGCUGGCUCGAGG
Length:
21
precursor sequence:
GGUGGCUUGUGGGGAAUGUUGGCUGGCUCGAGGUAUCCACAUCUUAAUUCCUCUCCGGCGAUCGAGCCGGCUCGGGCGUGUGGAAGCGUCGGACCAGGCUUCAUUCCUCGCAAGCCGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
20
NEP:
7.3%
LE_num:
LEP:
9.49%
ME_num:
MEP:
55.84%
HE_num:
HEP:
27.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
ovary
Tau :
0.91
Avg Expression:
140.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.55966499554217 | 4.01060180086522e-06 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.99846255808894 | 1.11677928846605e-07 |
| 3 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.85556311864872 | 6.40985232526295e-05 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -2.38637054791298 | 1.53287799151063e-10 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.90772656183326 | 0.00343783845655732 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -3.59511910219359 | 1.08842403863296e-15 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -2.1507926750893 | 6.99315620831037e-11 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | -3.13592001383921 | 3.51249936704212e-11 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -3.00272670170807 | 8.95615751133134e-11 |
| 10 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.06158131567802 | 0.0494156062378642 |
| 11 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.77397840545269 | 0.000219220747944668 |
| 12 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -4.79993390867058 | 0.0112230271047277 |