RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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total numbers: 1299

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Name	Database	Chromosome	Start	End	Strand	DE/TSE
osa-miR5079b	miRbase	Chr10	10916069	10916090	-	N/N
osa-miR5539b	miRbase	Chr12	20553832	20553853	-	N/N
osa-miR6249b	miRbase	Chr4	30286469	30286489	+	Y/N
osa-miR531c	miRbase	Chr11	26930692	26930715	+	Y/N
osa-miR11336-5p	miRbase	Chr1	35090297	35090320	+	Y/N
osa-miR11336-3p	miRbase	Chr1	35090379	35090403	+	N/N
osa-miR11337-5p	miRbase	Chr2	27593846	27593866	+	N/N
osa-miR11337-3p	miRbase	Chr2	27593919	27593939	+	Y/N
osa-miR11338-5p	miRbase	Chr2	34890514	34890537	+	N/N
osa-miR11338-3p	miRbase	Chr2	34890601	34890624	+	Y/N
osa-miR11339-5p	miRbase	Chr1	10371798	10371818	+	N/N
osa-miR11339-3p	miRbase	Chr1	10371868	10371888	+	N/N
osa-miR11340-5p	miRbase	Chr6	7715047	7715070	+	N/N
osa-miR11340-3p	miRbase	Chr6	7715459	7715482	+	Y/N
osa-miR11341-5p	miRbase	Chr9	22895132	22895155	+	N/N
osa-miR11341-3p	miRbase	Chr9	22895229	22895252	+	Y/N
osa-miR11342-5p	miRbase	Chr11	23289397	23289417	-	Y/N
osa-miR11342-3p	miRbase	Chr11	23289311	23289332	-	N/N
osa-miR11343-5p	miRbase	Chr12	16169144	16169164	-	Y/N
osa-miR11343-3p	miRbase	Chr12	16169071	16169091	-	N/N
osa-miR11344-5p	miRbase	Chr10	21166686	21166707	+	Y/N
osa-miR11344-3p	miRbase	Chr10	21166714	21166734	+	N/N
osa-miR2120b-5p	miRbase	Chr1	1830261	1830280	+	N/N
osa-miR2120b-3p	miRbase	Chr1	1830288	1830307	+	N/N
osa-miR5801c-5p	miRbase	Chr8	20930473	20930493	+	N/N
osa-miR5801c-3p	miRbase	Chr8	20930517	20930537	+	N/N
osa-miR6245b-5p	miRbase	Chr12	12892596	12892616	-	Y/N
osa-miR6245b-3p	miRbase	Chr12	12892477	12892497	-	N/N
Osa-miR397b	PmiREN	Chr2	3280864	3280885	-	Y/Y
Osa-miR397a	PmiREN	Chr6	28489798	28489818	+	Y/Y
Osa-miRN2228b	PmiREN	Chr8	4435491	4435511	-	N/Y
Osa-miRN2232d	PmiREN	Chr9	6711930	6711950	-	Y/N
Osa-miRN2232e	PmiREN	Chr1	26307378	26307398	+	Y/N
Osa-miRN2232b	PmiREN	Chr6	8837476	8837496	+	Y/N
Osa-miRN2232c	PmiREN	Chr7	24306549	24306569	-	Y/N
Osa-miR11340	PmiREN	Chr6	7715339	7715361	+	N/N
Osa-miR2871	PmiREN	Chr4	8340904	8340924	+	Y/N
Osa-miRN2232j	PmiREN	Chr12	25611723	25611743	+	Y/N
Osa-miR2876	PmiREN	Chr6	17008984	17009005	-	Y/N
Osa-miRN2203b	PmiREN	Chr1	7857738	7857758	+	Y/N
Osa-miRN2203a	PmiREN	Chr1	25180654	25180674	+	Y/N
Osa-miR3979	PmiREN	Chr11	19480162	19480182	+	Y/Y
Osa-miRN2309c	PmiREN	Chr3	33124849	33124869	-	N/Y
Osa-miRN2309b	PmiREN	Chr10	20405654	20405674	-	N/Y
Osa-miRN2309a	PmiREN	Chr7	29070631	29070652	+	Y/N
Osa-miRN2332	PmiREN	Chr9	8961276	8961296	-	N/N
Osa-miRN2354	PmiREN	Chr12	24297192	24297212	+	Y/N
Osa-miRN2355	PmiREN	Chr1	20077203	20077223	+	N/N
Osa-miRN2356	PmiREN	Chr2	20358270	20358290	-	N/N
Osa-miR1846h	PmiREN	Chr2	26544128	26544147	-	Y/N
Osa-miR818b	PmiREN	Chr2	4007276	4007301	+	N/N
Osa-miRN2351	PmiREN	Chr12	24395829	24395849	-	N/Y
Osa-miRN2352	PmiREN	Chr12	18628386	18628406	-	N/N
Osa-miR818a	PmiREN	Chr2	28768227	28768250	+	Y/N
Osa-miR1846g	PmiREN	Chr11	21603039	21603059	-	Y/Y
Osa-miR1846f	PmiREN	Chr10	6857378	6857397	-	Y/N
Osa-miR1846e	PmiREN	Chr9	13211472	13211495	-	Y/N
Osa-miR11337l	PmiREN	Chr4	14006148	14006168	+	N/N
Osa-miR2118l	PmiREN	Chr11	7810747	7810768	-	Y/Y
Osa-miR2118i	PmiREN	Chr11	7810261	7810282	-	Y/N
Osa-miRN2321	PmiREN	Chr2	10642797	10642817	+	N/Y
Osa-miRN2320	PmiREN	Chr1	19145141	19145161	-	N/Y
Osa-miRN2278	PmiREN	Chr2	20259532	20259552	+	Y/Y
Osa-miR3982	PmiREN	Chr11	1384746	1384766	-	Y/Y
Osa-miRN2327	PmiREN	Chr5	6140527	6140547	-	N/Y
Osa-miRN2326	PmiREN	Chr5	13984508	13984528	-	N/Y
Osa-miR11337p	PmiREN	Chr9	15244712	15244732	+	Y/N
Osa-miR11337q	PmiREN	Chr12	4776554	4776575	-	Y/N
Osa-miR11337r	PmiREN	Chr2	6143086	6143107	-	Y/N
Osa-miR11337s	PmiREN	Chr3	31459681	31459702	-	Y/N
Osa-miR11337t	PmiREN	Chr7	2096379	2096400	-	Y/N