RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR3979-3p	miRbase		Chr11	19480234	19480253	+	Y/Y
osa-miR3980a-5p	miRbase		none	none	none	none	N/N
osa-miR3980a-3p	miRbase		none	none	none	none	N/N
osa-miR3980b-5p	miRbase		none	none	none	none	N/N
osa-miR3980b-3p	miRbase		none	none	none	none	N/N
osa-miR812n-5p	miRbase		Chr8	14108258	14108281	-	Y/N
Osa-miR812n	miRbase/PmiREN	/	Chr8	14108083	14108106	-	Y/N
osa-miR812o-5p	miRbase		none	none	none	none	Y/N
osa-miR812o-3p	miRbase		none	none	none	none	N/N
osa-miR3981-5p	miRbase		Chr5	4302836	4302856	+	N/N
osa-miR3981-3p	miRbase		Chr5	4302897	4302917	+	N/N
Osa-miR2873b	miRbase/PmiREN	/	Chr2	18974876	18974896	+	N/N
osa-miR3982-5p	miRbase		Chr11	1384931	1384951	-	N/N
osa-miR3982-3p	miRbase		Chr11	1384745	1384765	-	Y/Y
osa-miR5071	miRbase		Chr8	4114070	4114090	-	N/N
osa-miR5072	miRbase		Chr6	17458738	17458759	-	N/N
osa-miR5073	miRbase		Chr8	19020505	19020527	+	Y/N
osa-miR5074	miRbase		Chr12	12674526	12674546	+	N/N
osa-miR5075	miRbase		Chr11	7878346	7878366	-	N/N
osa-miR5076	miRbase		Chr1	43208632	43208653	-	Y/N
osa-miR5077	miRbase		Chr3	14094764	14094782	+	N/N
osa-miR5078	miRbase		Chr5	21907872	21907892	-	N/N
osa-miR5079a	miRbase		Chr6	28181418	28181439	+	N/N
osa-miR5080	miRbase		Chr10	2322030	2322050	-	N/N
osa-miR5081	miRbase		Chr7	16898	16919	-	N/N
osa-miR5082	miRbase		Chr11	1286653	1286676	+	Y/N
osa-miR5083	miRbase		Chr1	41010583	41010602	-	Y/N
osa-miR5143a	miRbase		Chr1	8417119	8417142	-	Y/N
osa-miR5144-5p	miRbase		Chr1	25326778	25326798	-	Y/N
osa-miR5144-3p	miRbase		Chr1	25326399	25326419	-	Y/Y
osa-miR5145	miRbase		Chr1	40622693	40622716	-	Y/N
osa-miR5146	miRbase		Chr1	22418344	22418367	+	N/N
osa-miR5147	miRbase		Chr2	17049866	17049886	-	Y/N
osa-miR2863c	miRbase		Chr2	29869574	29869597	+	Y/Y
Osa-miR5148a	miRbase/PmiREN	/	Chr3	9968955	9968980	-	Y/N
Osa-miR5148b	miRbase/PmiREN	/	Chr6	27436699	27436724	+	Y/N
Osa-miR5148c	miRbase/PmiREN	/	Chr11	2813208	2813233	-	Y/N
osa-miR5149	miRbase		Chr3	29756528	29756549	-	Y/N
Osa-miR5150	miRbase/PmiREN	/	Chr4	18470798	18470823	+	Y/N
osa-miR5150-3p	miRbase		Chr4	18470833	18470856	+	Y/N
osa-miR5151	miRbase		Chr5	3661606	3661627	-	Y/N
osa-miR5152-5p	miRbase		Chr5	28910228	28910248	-	N/N
osa-miR5152-3p	miRbase		Chr5	28910050	28910070	-	N/N
osa-miR5153	miRbase		Chr5	2518523	2518546	+	Y/N
osa-miR5154	miRbase		Chr6	5263517	5263540	+	Y/N
osa-miR5155	miRbase		Chr8	9179597	9179620	-	N/N
osa-miR5156	miRbase		Chr8	16956068	16956091	-	N/N
osa-miR5157a-5p	miRbase		Chr8	21476224	21476247	-	N/N
osa-miR5157a-3p	miRbase		Chr8	21476175	21476198	-	N/N
osa-miR5157b-5p	miRbase		Chr8	21489226	21489249	-	N/N
osa-miR5157b-3p	miRbase		Chr8	21489177	21489200	-	N/N
osa-miR5158	miRbase		Chr8	23993600	23993623	+	Y/N
Osa-miR5159	miRbase/PmiREN	/	Chr11	11920762	11920785	+	Y/N
osa-miR5160	miRbase		Chr12	2039483	2039504	-	N/N
Osa-miR5161	miRbase/PmiREN	/	Chr12	12083796	12083817	+	N/N
osa-miR5162	miRbase		Chr12	16421208	16421231	+	N/N
Osa-miR5337a	miRbase/PmiREN	/	Chr4	5621974	5621994	+	N/N
osa-miR5338	miRbase		Chr5	15185821	15185841	-	N/Y
osa-miR5339	miRbase		Chr6	29362783	29362803	-	N/N
osa-miR5340	miRbase		Chr2	5683388	5683410	-	Y/N
osa-miR5484	miRbase		Chr2	7796932	7796952	-	Y/N
osa-miR5485	miRbase		Chr3	22088162	22088182	-	N/N
Osa-miR5486	miRbase/PmiREN	/	Chr3	26838901	26838921	+	Y/N
Osa-miR5487	miRbase/PmiREN	/	Chr4	17569172	17569192	+	N/Y
Osa-miR5488	miRbase/PmiREN	/	Chr12	18039140	18039162	+	N/Y
Osa-miR5489	miRbase/PmiREN	/	Chr11	23057503	23057525	-	N/Y
Osa-miR5490	miRbase/PmiREN	/	Chr11	25091568	25091590	-	N/Y
Osa-miR5491	miRbase/PmiREN	/	Chr9	6896428	6896448	+	N/N
Osa-miR5492	miRbase/PmiREN	/	Chr6	16973826	16973846	+	N/N
osa-miR5493	miRbase		Chr2	22898270	22898290	+	Y/N
Osa-miR5494	miRbase/PmiREN	/	Chr1	2317365	2317387	-	N/Y