RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

Fliter by Chromosome:

Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR5526	miRbase		Chr10	1584957	1584977	+	N/N
Osa-miR5527	miRbase/PmiREN	/	Chr11	9589970	9589990	+	N/Y
osa-miR5528	miRbase		Chr11	9586997	9587017	-	N/N
osa-miR5529	miRbase		Chr11	24804937	24804957	-	N/Y
osa-miR5530	miRbase		Chr12	21782338	21782358	+	N/Y
osa-miR5531	miRbase		Chr3	10288543	10288564	+	N/N
osa-miR5532	miRbase		Chr4	23647976	23647997	+	N/N
osa-miR5533	miRbase		Chr4	2761849	2761869	-	N/N
osa-miR5534a	miRbase		Chr11	6404363	6404383	-	N/N
osa-miR5534b	miRbase		Chr11	6404490	6404510	-	N/N
osa-miR5535	miRbase		Chr12	12446271	12446292	-	N/N
osa-miR5536	miRbase		Chr9	9140172	9140193	-	Y/N
osa-miR5537	miRbase		Chr10	11112761	11112782	+	N/N
osa-miR5538	miRbase		Chr10	21337293	21337314	+	Y/N
osa-miR5539a	miRbase		Chr12	20548938	20548959	-	N/N
osa-miR5540	miRbase		Chr1	35552738	35552758	-	N/N
Osa-miR5541	miRbase/PmiREN	/	Chr2	10239116	10239136	-	N/N
Osa-miR5542	miRbase/PmiREN	/	Chr4	32797727	32797747	-	N/N
osa-miR5543	miRbase		Chr4	16417319	16417339	-	N/N
osa-miR5544	miRbase		Chr2	19335011	19335032	+	N/N
osa-miR5788	miRbase		Chr3	30006963	30006983	+	Y/N
Osa-miR812p	miRbase/PmiREN	/	Chr8	25426161	25426184	+	Y/N
osa-miR812q	miRbase		Chr10	18223589	18223612	+	Y/N
Osa-miR5789	miRbase/PmiREN	/	Chr6	1801939	1801961	-	N/N
osa-miR5790	miRbase		Chr11	7740111	7740134	-	N/N
osa-miR5791	miRbase		Chr12	24374520	24374540	+	N/Y
osa-miR5792	miRbase		Chr10	11842888	11842911	+	Y/Y
osa-miR5793	miRbase		Chr11	24289002	24289022	+	Y/Y
osa-miR5794	miRbase		none	none	none	none	Y/Y
osa-miR812r	miRbase		Chr11	18809925	18809948	+	Y/N
osa-miR5795	miRbase		Chr9	11103946	11103967	-	Y/N
osa-miR5796	miRbase		Chr8	2672531	2672551	-	N/Y
osa-miR5797	miRbase		Chr8	17084777	17084797	+	N/Y
osa-miR5798	miRbase		Chr7	6672130	6672150	-	N/Y
osa-miR812s	miRbase		Chr3	6033241	6033264	-	Y/N
osa-miR5799	miRbase		Chr6	10732173	10732196	+	N/N
Osa-miR5800	miRbase/PmiREN	/	Chr11	24921150	24921170	-	N/Y
Osa-miR5801a	miRbase/PmiREN	/	Chr12	19318259	19318284	-	N/N
Osa-miR5802	miRbase/PmiREN	/	Chr1	13088732	13088757	+	Y/N
osa-miR812t	miRbase		Chr6	17370237	17370260	-	Y/N
osa-miR812u	miRbase		Chr11	8663591	8663614	-	Y/Y
osa-miR5803	miRbase		Chr4	30231544	30231567	+	Y/N
Osa-miR5804	miRbase/PmiREN	/	Chr4	20810170	20810190	-	Y/N
osa-miR5805	miRbase		Chr12	13821863	13821886	-	Y/N
osa-miR5806	miRbase		Chr6	24708676	24708696	+	Y/Y
Osa-miR812v	miRbase/PmiREN	/	Chr5	18432845	18432870	-	N/N
osa-miR5807	miRbase		Chr8	3597816	3597839	-	N/N
osa-miR5801b	miRbase		Chr9	18739256	18739279	+	Y/N
osa-miR5809	miRbase		Chr4	23527612	23527631	-	N/N
osa-miR5810	miRbase		Chr12	7333302	7333325	-	N/N